FMO04170.5prime Sequence
930 bp (930 high quality bases) assembled on 2008-08-22
> FMO04170.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGACAATAATCCG
ACGACCCCTGCTTTGCTTGCTCAGAGCTCCTCGGTAAACGTGTTCCACGA
TGAATCACTGTTACCTCAGCGTAATGTAAAAACAAGTGAGAATGTTCCAC
CAACTTGTGCGGAGAAAACGTTGTTTGTGCTGTCCATGATTCTGATAGTC
CTTTGCCTGCCGTGGTCCCTATTCTGCTGTCTCAGGGTAATGTCGGAGTA
CGAGCGAGCGGTAATCCTGCGCCTGGGTCGCCTGCGCCCTAAGCCCCCGA
GGGGGCCAGGCGTCATCTTTCTCGTGCCCTGCATTGATGACCTCGCTGTT
GTGGACATACGTACCAGGTCATTTGACCTACATAGACAGGAAATCCTCAC
TCGTGACATGGTGACGATCAGCATCGACGGAGTGGTGTACTACAGCATCA
AGAGCCCATTCGACGCCATGCTGCAAGTATACGATCCGGAGGAGGCGACC
GAGAAGCTAGCAATGACCACGCTGCGTAACGTGGCCGGCACCCACAAGCT
AATGGATTTGCTCTCGTCCAAGGAGTACCTCTCCAACCAAATAGAGGGTA
TATTGTACAACTCCACAGAGCCCTGGGGCATACGCGTGGAACGGGTCGAG
ATCAAGGAGATCTTCATGCCTGATCAACTGAAGCGCGCCCTGGCTGTGGA
ACAGGAGGCGATGCGTGAGGCCAAGGCCAAGGTGGCCGCGGCGCAGGGGG
AGCGAGATGCGGTAACTGCTCTGAAGGAGGCTGCCGACATAATGGAGACC
AACCCCATAGCCCTGCAGCTACGGTACTTGCAAACACTGAACTCCATCTG
CAATGATGACACCCGGTCCTACGTCTTTCCTTTTCCTGTAGACATTGTGA
GGAATTTGATGAGGCAGCTTTCTAGACCAT
FMO04170.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14644-RA | 1034 | CG14644-RA | 69..945 | 36..912 | 4385 | 100 | Plus |
| CG14644-RB | 995 | CG14644-RB | 228..906 | 234..912 | 3395 | 100 | Plus |
| CG14644-RB | 995 | CG14644-RB | 69..170 | 36..137 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4252298..4252814 | 652..136 | 2585 | 100 | Minus |
| 3R | 32079331 | 3R | 4251983..4252242 | 912..653 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 4252874..4252975 | 137..36 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:16:19 has no hits.
FMO04170.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:19 Download gff for
FMO04170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14644-RA | 66..954 | 30..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:17:58 Download gff for
FMO04170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14644-RA | 66..954 | 30..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:45 Download gff for
FMO04170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14644-RA | 66..954 | 30..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:45 Download gff for
FMO04170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4252876..4252978 | 30..135 | 97 | | Minus |
| 3R | 4251974..4252242 | 653..921 | 98 | <- | Minus |
| 3R | 4252298..4252814 | 136..652 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:19 Download gff for
FMO04170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 77696..77964 | 653..921 | 98 | <- | Minus |
| arm_3R | 78020..78536 | 136..652 | 100 | <- | Minus |
| arm_3R | 78598..78700 | 30..135 | 97 | | Minus |
