FMO04171.5prime Sequence
1216 bp (974 high quality bases) assembled on 2008-08-22
> FMO04171.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGGATCGAG
CAAAGGATAATACCGATGAGCCTGCTGACTTCGAGACGGCAATCGCAGAG
TGTGGCTTTGGGCTCTTCAACGTGTTCATCCTGTGCAGCGCGGTACCCTG
CCTCACGGCGATGGTCTTCTCGGCCTCGGCGCTGTCCTATGTGATGCCCT
CCGCCGAGTGTGACCTTGACCTGAGCATCGTGGACAAGGGAATGCTGCAT
GCGGTGACCTATGCGGGCATGCTCATCTCGGCGGTGCCCTGGGGATTTAT
AGCAGACACCATTGGACGCCGACCCGTCCTCATTTCGGGCGGCTGGCTTG
ATGGCTTCTTCGTCCTGTGCGCTTCGCTCAGCCAGAACACTGCCCAACTG
ATGGCCTTCAAGTTCTTCGATGGTTTAATCATCTGCGGTCCATTTGCGGT
CGTGGTCAGCTACCTGGCCGAGTTCCATGGCAAAAAGCATCGGCCTTACA
TCATGCTGTTCGTGGGTCTGTGTGTTTCCATTGGATCGATGATTTTGCCC
CTGCTCTCCTATTTGCTGCTACCGGTGCCCATCCTTTTCACGGTCTCCTC
GATGAAGTTTCGCACCTGGCAGGTCTTCCTGGCGGTCAGCTCGGCGCCCA
GTCTGCTCAGCGGTTTTCTGCACATCTTCCTGCCCGAGAGCCCCAAGTTC
CTTATGTCTCAGGGAAATTATAAAAAGGCTTTGGACTCCTTGCAGCGCAT
CTACAAGCTGAACAAGCGGAAGAGCAGAGAGAGCTATCCGATAAACATCT
CACCGATCCCACGCCCGATCGGTCTGATGATCTTGATGGTACTGGTCGGC
CATCAACCACTCCAGGAAAGATTTAGTCAACTCGTCAGAGCAAGTTCATC
GATGGATTCAAGCAGCTGAAGCCTATGTCTCAGTCCCTACTTGGCATTTC
ACTGCAGTTATTGCCTGCATTCTGCAGATATGTCTTGTCAACTCGTGCGT
CTGTGGCTGCCAGATCTTTGCACGATGACGTCATGACCTTTGGGTGCGAT
GACCGAGCATGTGCGCGTTGACCCATGCAATGCAATCATGATTAGAGAAA
TAGGTGATGCGCTTATTGGTAGAAATCGCTGTTTGGCTTCGAATCTACCG
GATTGACTGTCGTTCGACTTTTCTAAGCCATTCAAGGTTCTCGAATCCAA
TCTGAGCGGATGAAAT
FMO04171.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14691-RC | 1675 | CG14691-RC | 73..1115 | 38..1066 | 4610 | 97.2 | Plus |
| CG14691-RA | 1708 | CG14691-RA | 73..1115 | 38..1066 | 4610 | 97.2 | Plus |
| CG14691-RB | 1672 | CG14691-RB | 73..1115 | 38..1066 | 4610 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10755171..10755562 | 429..38 | 1945 | 99.7 | Minus |
| 3R | 32079331 | 3R | 10754688..10754869 | 790..609 | 910 | 100 | Minus |
| 3R | 32079331 | 3R | 10754928..10755106 | 608..430 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 10754436..10754616 | 971..793 | 535 | 92.4 | Minus |
| X | 23542271 | X | 951575..951674 | 294..195 | 230 | 82 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:48 has no hits.
FMO04171.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:26 Download gff for
FMO04171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-RB | 70..1119 | 35..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:00 Download gff for
FMO04171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-RA | 70..1119 | 35..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:26 Download gff for
FMO04171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-RB | 70..1119 | 35..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:26 Download gff for
FMO04171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10754688..10754869 | 609..790 | 100 | <- | Minus |
| 3R | 10754928..10755106 | 430..608 | 100 | <- | Minus |
| 3R | 10755171..10755565 | 35..429 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:26 Download gff for
FMO04171.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6580410..6580591 | 609..790 | 100 | <- | Minus |
| arm_3R | 6580650..6580828 | 430..608 | 100 | <- | Minus |
| arm_3R | 6580893..6581287 | 35..429 | 99 | | Minus |
