FMO04172.5prime Sequence
1270 bp (1003 high quality bases) assembled on 2008-08-22
> FMO04172.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAAAGTAACGAA
GATGTAGAGCGCCTTCTGTGTCAAAAGTATCCTGGTCTGGCAGCGGAGCT
TCAGCCAAGTGGAGCGTGCATCATCAGAGGAGTTTTGGGCAGTGAGGATA
CATGGCGCCGCCTTAAACTCTATCTGCCACACCACCCAGCTCTTCATGGT
TTCCAGCTCTACGTCCAGGAAAGCTTGGAGTACAAGCTGTACACATCGGC
TAATCTCAAGTTACAGGACGATTGGCTGCTGGAGGATTTTCTGGACCATT
TGCCAAAGATTCTTCCTGCCCAAAAAGCCCCAACAGTGCCAAAGGAACTA
TGTCGGGAGGGGAACATATATTACGATATCCTGGCCTTGTACAAGTCAAA
CGAGTACTGCCTGCAAGTGGACGAGGCCTGTTCCATGATTCGTTTCAGCG
AATTCACCGACTTCGAGCAGCATTATCTGGAGCTTAAGATCCCGTCTCTT
CTCTTGCTTGATCACAGTTTGCCCGACTGCGTATCGCTGGGTGAAATGCT
GACCAAGAGTGCTGGAAACCTAGAGGAGGCCCTAAACCTCTTTCGCAAGC
TTCTCGAGGATCTGCGTCCCTTCTACGACAACTTCATGGATATCGACGAG
CTTTGTCATGTGCTGCAACCATCGCCCATCAGCAGCAAACACAAAACACG
ACTGTTCCCTCTCAAGGATCGCGTCTATGTGAAGCTGACCATCGCGGATC
CCTTTGCCTGCATTGCATCCATGTCGCTAAAGATCATTGGGCCCACGGAA
GAGGTGGCCCGCCTGCGCCACGTTTCTCAGCGATGGTCTAAGGTAACTGG
GACTCCGAAATGAACATTCACAAGACCCTACTCCGAATGTTCGACTTGTG
CTACTTTCCCATGCCAGACTGGTCGGATGGACCCAGCTGGATGAAGAGGA
CAACGAAGAGCTGCCCTGTTACATTTGGCTTTGCCTATCGGCCTGAATGG
TGGCGAGGTGCCCCCCGTCCTCCTGCCAACATGCCAAATGTGTGCTAAAG
TGCCATGCCGTCTGCTTGGAGGAATGGTTTAAGACTCTGATGGATGTAGA
ACCTTTCTGGAGGTCTCCCTTCGGCCCATGTTCCCTTCGGCAGGCCAGCT
GTCCACCCCTCATTCGCCGCACATTAAAGTATGCCAAGCTTCCAGACCAT
CGTTGGCCCGCGGGTCCAGTAGTGACCAATCCAAATCCAAAATCTAAATC
CATAATCCCACCCACGCATA
FMO04172.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fancl-RB | 1245 | CG12812-RB | 64..1192 | 36..1172 | 5075 | 97 | Plus |
| Fancl-RA | 1248 | CG12812-RA | 64..1195 | 36..1172 | 5075 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10051670..10052640 | 1118..145 | 4305 | 97.7 | Minus |
| 3R | 32079331 | 3R | 10052695..10052806 | 147..36 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:25:24 has no hits.
FMO04172.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:03 Download gff for
FMO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 64..1165 | 36..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:02 Download gff for
FMO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 41..1142 | 36..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:13 Download gff for
FMO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fancl-RA | 64..1165 | 36..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:13 Download gff for
FMO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10051670..10052638 | 147..1118 | 97 | <- | Minus |
| 3R | 10052696..10052806 | 36..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:03 Download gff for
FMO04172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5877392..5878360 | 147..1118 | 97 | <- | Minus |
| arm_3R | 5878418..5878528 | 36..146 | 100 | | Minus |
