FMO04173.5prime Sequence
801 bp (801 high quality bases) assembled on 2008-08-22
> FMO04173.5prime
TTCGTATAGCATAATAAAACGAAGTTATCAGTCGACATGAGTTCGGGCTT
TGTGACTGAAGCTGAGGCGACCGAGCAAAGGCAGAGACGTCAGGAGGAAT
GGGAGCGTGTACGCCAGCCGGAGGATCCACTAGAACGACCTGAGGAACCC
TACGATGGGCGCTCACTTTATGAACGCCTCAAACAAAATAAGGACAAGAA
GGACATGGAGTTCGAGGAAGCCCACAAGCTGAAAAACCTCATCCGTGGTC
TGGACGATGATGAGGTGCAGTTTCTGGAATTGGTCGATGCCCATAAAATA
CACGCGGAGCGCCAGCAAATGCGCGACGAGGAGCTAGAACTAAAGGATTT
TCGCAATCGTGTGGAAAAGCTGCAGGAGGAGAGTGTAGACAAGAAACTGC
AAGCTGAACTAAAAACCACAGCGAAGTCCGCGGGAGCTTCGGTCGGGCGT
AGCACTCAGAAGACGCTGCTCGGCCAGGGCATCAAGAGAAAAAACGGCGA
ACTGCCCACCACCAGTAAAGTAGCCAAAATCACTGAGAATGAGGTCGAAC
AGACAGCGACAAATGAAGCAACCAAGGACCCTGCTGATAAGACAACGAAC
ACCACATTAATTACAAACAAATACAACCAGGGGGCCCTAAAGTGCATCGC
TATACTTCCGGGCATCGGCTCCTACACGGAGTCTAGTGACTCGGAGGCCA
GCACCGATGAGGAGGAACCCAGTATGTGCAGCCGAACCGACTTATGTGGC
CGCAAAATTCCCAAGAAGAAGCAGTGCTCAGAGGCAAGCTTTCTAGACCA
T
FMO04173.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14480-RB | 875 | CG14480-RB | 53..800 | 36..783 | 3740 | 100 | Plus |
| CG14480-RA | 1337 | CG14480-RA | 515..1262 | 36..783 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17565386..17565777 | 392..783 | 1960 | 100 | Plus |
| 2R | 25286936 | 2R | 17564907..17565103 | 36..232 | 985 | 100 | Plus |
| 2R | 25286936 | 2R | 17565164..17565324 | 233..393 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:04 has no hits.
FMO04173.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:29 Download gff for
FMO04173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14480-RA | 508..1262 | 30..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:31 Download gff for
FMO04173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14480-RA | 508..1262 | 30..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:34 Download gff for
FMO04173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14480-RA | 508..1262 | 30..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:34 Download gff for
FMO04173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17564900..17565103 | 30..232 | 98 | -> | Plus |
| 2R | 17565164..17565324 | 233..393 | 100 | -> | Plus |
| 2R | 17565388..17565777 | 394..783 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:29 Download gff for
FMO04173.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13452405..13452608 | 30..232 | 98 | -> | Plus |
| arm_2R | 13452669..13452829 | 233..393 | 100 | -> | Plus |
| arm_2R | 13452893..13453282 | 394..783 | 100 | | Plus |
