FMO04175.5prime Sequence
945 bp (945 high quality bases) assembled on 2008-08-22
> FMO04175.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCAATCGATG
ATATGAAGGACCTATTGATCGTAAATGTTTCTGACCAAGAGGATGCAGGT
ATGTCAGATGACTTGAAGGAAACTGCAATGGATTGTAATATGCCCGATGG
TGAATCTTCTCTCGTAATCACTGATGGCGATTCTATGTCAAAGATCCCTG
ATGACGCTGCCATGGCAACCAGCGACCCTAAGAAGAAAAAGAAGAAGGTA
AAGAAATTGAAACGTTCCCAAAAAGCCAAGGATCGTCTTGTTCGCCCGTT
GCCCAAGGCCGTGACCTCCAAGGATGCCCTTATGGTTTTGAAAGAGTTAA
AGGGCGTGATAATCGACAACATGCAAATAAAACAAGACCACGAGGGGAAG
AATGTGGCTAACATTGTTGTTAACTCAAAGAAATACGATGCGGAGGGTTC
TTCAGAAAACTCTGCAGGGAATGCAGCTTGCGAGAAGGCTCTGCGAGAAA
TCCTAACCACCAAAATGAAAGCTCTGTTGGCCGAGCCAGAAAACAGCTCG
GGAGGCGATGAAGATAATATACTCGAAAAGATGACCTCTTATGCCGTTTA
CAAACTTGCTGAGAAATGGAACAGCGACGCTATTGATGTTGCAGCCCTGT
ATAATGACGTAAAGAACAAGAAGACGTCGTCGTCAGTTGGACAGTTGCCC
AAATTATGGAAGAATATGCACCCTTGCATGGTTCTGATGCAAATGCGCCC
CCAGACCACCTTCAAATTTTTAGGTAGCTCTGGTGAAAACCGTAAAGTTT
TCTCAATGGGCGTCTCCGTGGACAACTGCGAGTTTAAGGCTGATGGGCCA
ACCAAAAAAGATGCACGCCGCAAAGTAGCCGCATTAGTTTGTAACAAACT
CTTTGGAACCGACTATCCACAGCAGCAAGCTTTCTAGACCATTCG
FMO04175.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12493-RA | 1173 | CG12493-RA | 126..1009 | 38..921 | 4420 | 100 | Plus |
| CG12493-RB | 1164 | CG12493-RB | 126..1000 | 38..921 | 4275 | 99 | Plus |
| blanks-RA | 1268 | CG10630-RA | 439..1078 | 291..921 | 1655 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4752557..4753372 | 921..106 | 4080 | 100 | Minus |
| 3L | 28110227 | 3L | 5497713..5498352 | 921..291 | 1550 | 83.9 | Minus |
| 3L | 28110227 | 3L | 4753544..4753613 | 107..38 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:16 has no hits.
FMO04175.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:19 Download gff for
FMO04175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12493-RA | 116..1018 | 28..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:33 Download gff for
FMO04175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12493-RA | 96..998 | 28..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:26 Download gff for
FMO04175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12493-RA | 116..1018 | 28..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:26 Download gff for
FMO04175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4752554..4753370 | 108..923 | 99 | <- | Minus |
| 3L | 4753544..4753623 | 28..107 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:19 Download gff for
FMO04175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4752554..4753370 | 108..923 | 99 | <- | Minus |
| arm_3L | 4753544..4753623 | 28..107 | 95 | | Minus |
