FMO04178.5prime Sequence
1227 bp (977 high quality bases) assembled on 2008-08-22
> FMO04178.5prime
CGTATAGCATACCTTATACGAAGTTATCAGTCGACATGTTCCATAACTCA
AATTTTTTCGAGCCGGGCAAATCGAAGCCAGAGCGAAGCTTCGTCCAATT
GGCGGTGAAGCAAAACCAACGCCTCGATGGGCGGCGCTCCAACGAGTCCC
GCGATGTGGAGCTGACCTTCGGCAAGGATTGGGGCTCCGTGGCGGTGTCC
ATGGGCGATACGAAGGTACTGGCCCAAGTGACCTGCGAAATGGGACCGCC
GGCCTTGTCGCGGCCCAACGAAGGCAAAATCCACCTGAACGTATATCTTG
GCGGTGTTGCTTTTCTGGACGAGGCACATACCACACATGACCAGCGATCG
CTAAAACTGAACTCCCTGCTCGAGAGGACCTTCCGCAGCTCTAGAAGCAT
CGATCTGGAATCTCTGTGCGTGGCCGTCGAGAAGCATGTGTGGTGCATCC
GTGTCAACGTCAATGTGCTCAATCACGACGGGAATCTGTATGACGCCAGC
ACCATAGCCACTTTGGCTGCATTGATGCACTTCCGTCGACCGGATGTCTG
GTATAAGGACGGCGAACTGCGCATCTTTAAGAAAAAGGAGCGCGAATTCA
TTCCACTGCTTTTCCACCACTATCCCGTCAGTGTAACCTACTGTGTTTAC
AAGAGCAGTGTGCAACCAATACTGGATCCTACGCTGCTGGAGGAGAACGC
CGCCGATTCGGTAATTGTCCTGAGCTTTAACTCCTTCCAGGAGCTGTGCA
GCCTGACTGCCGGAGGCACTGCACCCACAAATGCCCGTATCATCATGCAG
TGTGCCCGCAATGCGGCGGTTCGTTGCAAGTCTCTGTTGAATTTCGTACG
CAAAGCTTTGGCGCTGGACGAGAGTGTCGATCGCAGGGCGATCAATCGGT
CGATGGGTCTGGTGGCACTGATTTTAATACGAGCACAGTTGAGCTACAAC
AAACTGATGGGCAGACTGAAACAGGAGCAGCAACTCGCCAAGCTAGAAAA
TGCAGTGGATATACGAGAGCAGTGAGACGCTGTGCTACGAAAGCGTCAAG
AGGAAGTGCTGGACACGATGAAACACGACTGCTGCCCACGAATGAGACTC
AGGAACTGTCATGCCTCGAGCAGCATCGAGGCAGGCTTAGCACAGTTCGG
GCAATACAGTCAAAAATGAACGCGATATTCACGATCGAGGAGACAGCAAC
TGCAAGCTCTACACCTCTTTTCGCGGG
FMO04178.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp45-RB | 1647 | CG9606-RB | 137..1179 | 36..1062 | 4715 | 97.8 | Plus |
| Rrp45-RA | 1599 | CG9606-RA | 137..1179 | 36..1062 | 4715 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16790674..16791130 | 492..36 | 2270 | 99.8 | Minus |
| X | 23542271 | X | 16789968..16790514 | 1030..492 | 2235 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:53:19 has no hits.
FMO04178.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:17 Download gff for
FMO04178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 100..1124 | 28..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:39 Download gff for
FMO04178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 18..1042 | 28..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:44 Download gff for
FMO04178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 133..1157 | 28..1044 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:44 Download gff for
FMO04178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16789968..16790513 | 493..1030 | 97 | <- | Minus |
| X | 16790674..16791134 | 28..492 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:17 Download gff for
FMO04178.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16684001..16684546 | 493..1030 | 97 | <- | Minus |
| arm_X | 16684707..16685167 | 28..492 | 98 | | Minus |
