FMO04180.5prime Sequence
903 bp (903 high quality bases) assembled on 2008-08-22
> FMO04180.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATTTTTGTTC
AGTGCCTTACGAAGCTGACTACGGCATGTACGCCGATTCCAAGATGAAGA
GCGTTCCTCAGTACCCCCTGAGCATGGGAGTCGGTCAGGGTCAAGGACAG
TCCATGGCCATGCAGCCCCTGAATCCACCGCAGATGAATCTGCAGATGCA
GATGCCCGTGTGCCAGTCGGGCGCTTCGTCGTACCCAATGCAGGGTATGC
CGCTGGGCATGATGCAAGGGGGCAATCAGATGACCCCCATGTCCACGATG
TCCACCCAGCTGCCGATTGGAGCGGTGACTCCCCTGAGCAGCATGACCAT
GATGCCCATGATGGGCAATCCCATGGGCGCCATCGATGCCCCCGGGATCA
ATGCAGTGCTGCCTGACCTGCAGCCGATGACCTCGATGGGTCAGATGCAG
CCGCTGCAACAGTACAATCCCAGTGGATCTACCACCCAAATGCATCAAGG
ACGTCTGACGGGCGGCTGCAATGCTGTGATGTCTGCGCCCTGTCCCTCGT
CGCCCTCGCAAGCTGGCGGCTGGAGCTCCGGTCCCAGCCCCAACCAAATG
ATGAACAGCTCCAATATGTGGCAATACAGTCAGCCTATGCAGAGTCACCA
GCCGCAGTACCACCAGCAGCACCAGCAGCAGCAGCAACAGCAGCAGCAGC
ACTATCAGCAGCCGAGCCAGGGACACCAACAGGTCAACCGGATGAAGACC
TCCTACGACGCTCCCATGTACCGGGATATGCGGAACGGTCTAAACGCACC
ATCGATACACGATTCATCGAAGTACAGCAAAGGCAATCAATCATTCAATT
GTGGAAAAGCGGTTAGCAAGGTCCCCCATTGGCGTGCAAGCTTTCTAGAC
CAT
FMO04180.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3124-RA | 1179 | CG3124-RA | 146..994 | 37..885 | 4215 | 99.8 | Plus |
| CG3124-RB | 1206 | CG3124-RB | 146..904 | 37..795 | 3765 | 99.7 | Plus |
| CG3124-RB | 1206 | CG3124-RB | 931..1021 | 795..885 | 455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23283153..23283855 | 794..92 | 3485 | 99.7 | Minus |
| 2R | 25286936 | 2R | 23283017..23283076 | 854..795 | 300 | 100 | Minus |
| 2R | 25286936 | 2R | 23283912..23283968 | 93..37 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:16:34 has no hits.
FMO04180.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:28 Download gff for
FMO04180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-RA | 138..994 | 29..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:43 Download gff for
FMO04180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-RA | 128..984 | 29..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:52 Download gff for
FMO04180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-RA | 138..994 | 29..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:52 Download gff for
FMO04180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23282928..23282959 | 854..885 | 100 | <- | Minus |
| 2R | 23283018..23283076 | 795..853 | 100 | <- | Minus |
| 2R | 23283153..23283853 | 94..794 | 99 | <- | Minus |
| 2R | 23283912..23283976 | 29..93 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:28 Download gff for
FMO04180.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19170451..19170482 | 854..885 | 100 | <- | Minus |
| arm_2R | 19170541..19170599 | 795..853 | 100 | <- | Minus |
| arm_2R | 19170676..19171376 | 94..794 | 99 | <- | Minus |
| arm_2R | 19171435..19171499 | 29..93 | 95 | | Minus |
