FMO04181.5prime Sequence
1076 bp (984 high quality bases) assembled on 2008-08-22
> FMO04181.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGTCGCAGGA
GGTGAGCGTAAACAAAGTGATAGTGCATCCATTGGTTCTGCTGTCCGTGG
TGGATCACTTCAACCGGATGGGAAAGATTGGCAACCAGAAGCGCGTAGTG
GGAGTCCTTCTGGGCTGCTGGCGATCCAAGGGAGTGCTCGATGTGTCCAA
CAGCTTCGCAGTGCCCTTCGACGAGGATGACAAGGACAAGTCGGTGTGGT
TCCTGGACCACGACTACCTGGAGAATATGTACGGCATGTTCAAAAAGGTG
AACGCCAGGGAACGGGTTGTGGGATGGTATCACACAGGTCCCAAGCTCCA
CCAAAACGACATAGCCATTAACGAGCTGGTCCGGCGCTATTGTCCCAACT
CCGTGCTGGTCATCATCGACGCCAAGCCCAAGGATTTGGGCCTGCCCACA
GAGGCGTACATATCGGTGGAGGAAGTCCATGACGACGGCTCTCCGACCAG
CAAAACCTTCGAGCATGTGCCCAGCGAGATTGGCGCCGAGGAGGCGGAGG
AGGTGGGCGTGGAGCATCTGCTGCGTGACATCAAGGACACAACCGTGGGC
AGCCTGTCGCAAAAGATCACCAACCAGCTCATGGGTCTGAAAGGCCTGAA
TGCCCAGCTGCGGGACATAAAGCAGTATCTGCAGCGCGTCGGCGACAGCA
AGATGCCAATCAACCACCAGATTGTCTACCAGCTGCAGGACATCTTCAAC
CTGCTGCCCGATATAACCAATGACCAGTTCACGGGCACAATGTATGTGAA
GACCAACGACCAAATGCTGGTCGTCTACCTGGCCTCCATGGTGCGCTCGA
TCATTGCCCTGCACAACCTGATCAACAACAAGCTGGCCAACCGCGACGCC
GAGGAGGGCAAGAGCGACAGCAAGGAGCCAAGGAGAGAATAAGGATAGCA
GGATATGACACAGAGACCAGGACAAGGACGCAGAAGCTCGAGTAGTAGCC
GACAGGGCAAGACGAGGCGCAAGGGTCGCGCAAGCAAGCTTTCTAACATT
CGGTTGGCCGGCCGGGCCCAGGTAGT
FMO04181.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn8-RC | 1473 | CG3416-RC | 201..1215 | 35..1033 | 4550 | 97.5 | Plus |
| Rpn8-RB | 1456 | CG3416-RB | 184..1198 | 35..1033 | 4550 | 97.5 | Plus |
| Rpn8-RA | 1456 | CG3416-RA | 184..1198 | 35..1033 | 4550 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24403429..24404172 | 209..950 | 3575 | 99.3 | Plus |
| 2R | 25286936 | 2R | 24403188..24403364 | 35..211 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:02:24 has no hits.
FMO04181.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:41 Download gff for
FMO04181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn8-RA | 179..1148 | 29..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:46 Download gff for
FMO04181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mov34-RA | 213..1182 | 29..990 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:47:59 Download gff for
FMO04181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn8-RA | 179..1148 | 29..990 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:47:59 Download gff for
FMO04181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24403183..24403364 | 29..211 | 97 | -> | Plus |
| 2R | 24403432..24404219 | 212..990 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:41 Download gff for
FMO04181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20290706..20290887 | 29..211 | 97 | -> | Plus |
| arm_2R | 20290955..20291742 | 212..990 | 97 | | Plus |
