FMO04183.5prime Sequence
1244 bp (1030 high quality bases) assembled on 2008-08-22
> FMO04183.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGGCCAAAAAA
CAGAAAATGCAGGAGACGGACACGGAGCAAGAGGCCACGCCACATACGAT
ACAGGCGCGCCTCGTTTCGGACACGGGCGAGGAAGCCGGCCCGCCAATCG
ACCTGCCGGCAGGAATCACTACCCAGCAATTGGGACTGATTTGCAACGCG
CTGCTGAAAAACGAGGAAGCCACTCCATATTTGTTTTTCGTGGGCGAGGA
TGAGATCAAGAAGAGCCTGGAGGACACGTTGGACTTGGCGTCAGTGGACA
CCGAAAACGTGATCGATATTGTGTATCAGCCACAGGCGGTTTTCAAAGTG
CGCCCAGTGACAAGATGCACGAGTTCCATGCCGGGACACGCCGAGGCTGT
GGTTTCGCTGAATTTCAGCCCGGATGGTGCTCATCTCGCCAGTGGAAGTG
GCGACACCACAGTGCGATTGTGGGATCTTAACACAGAGACACCGCACTTC
ACCTGCACAGGTCATAAGCAGTGGGTTCTGTGCGTATCCTGGGCTCCGGA
TGGCAAACGGTTGGCCAGCGGTTGCAAAGCGGGCTCTATAATCATCTGGG
ACCCGGAGACGGGTCAGCAGAAGGGGCGACCATTGAGTGGGCACAAGAAA
CACATCAACTGCCTCGCCTGGGAACCGTATCATCGCGATCCGGAGTGCAG
GAAACTTGCTTCCGCCAGTGGAGACGGGGACTGCCGGATTTGGGACGTAA
AATTGGGCCAGTGCCTTATGAACATTGCCGGACACACAAATGCTGTGACA
GCAGTGAGATGGGGTGGAGCGGGCCTTATTTATACATCCTCCAAAGATCG
CACAGTGAAGATGTGGCGAGCAGCTGATGGAATCTTGTGCCGGACGTTCT
TTTGGCACGCTCACTGGGTAAACAACATTGCGCTGAGCACCGATTACGTC
CTGCGCACTGGTCATTCATCCGGTGAAGATCGCTCCAAGAGCCACTCAGT
TGAGCACTGAGATTGCATGAATCTGCCTTGATCGCTACAGGCCGTTGTGC
CTGACGAGGTGGAGTCGCTGGTTTCTTGTCGATGAAACACCTTCTATTCT
GTGGCGAACAACAGAACAGCTGCGTGAGCCATTGACAGGACACAAACCTG
TCACGATGTGAAATTCGCGGAAGTAGCTATTGGCTCGCTCATTGACAATC
ATGGCTCGGGGACCAGCGAAGGACTAGACTATGCCCACTCTCGA
FMO04183.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nle-RA | 1584 | CG2863-RA | 58..1179 | 36..1143 | 4910 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 567102..568064 | 995..36 | 4550 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:36 has no hits.
FMO04183.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:53 Download gff for
FMO04183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 56..1131 | 33..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:26 Download gff for
FMO04183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 97..1172 | 33..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:30 Download gff for
FMO04183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nle-RA | 56..1131 | 33..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:30 Download gff for
FMO04183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 567089..568066 | 33..1006 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:53 Download gff for
FMO04183.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 567089..568066 | 33..1006 | 98 | | Minus |
