FMO04184.5prime Sequence
836 bp (836 high quality bases) assembled on 2008-08-22
> FMO04184.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATGCCCTGCGG
CAGTTCTACCTGGAGATCCCGGTGGTCACACGAGCCTACACCACGGTCTG
CGTGCTGACCACCTTGGCGGTGCACCTGGACCTGGTGTCGCCGCTGCAGC
TCTACTTCAATCCCACGCTGATTGTGCGCAAGTTCCAGATCTGGCGCTTG
GCCACCACATTCCTGTACTTTGGCACAATAGGCATCAGTTTCTTTTTCAA
TATGGTGTTTACATATCGATATTGTCGAATGTTGGAGGACGGATCTTTCC
GCGGACGCAGCTCCGACTTTGTCATGATGTTCATCTTTGGCGGCGTGCTA
ATGACCTTCTTCGGAATCTTCGTCAACCTGTTGTTCCTGGGCCAGGCCTT
CACATTAATGCTGGTCTATGTGTGGTCACGACGCAATCCACTGGTGCCAA
TGAATTTCTTCGGGGTGCTTAACTTCCAGGCGCCGTACCTTCCGTGGGTG
CTCCTCTGCTGCTCCATGATTCTGGGAAACACCGTGTGGGTGGATGTCAT
CGGCATGGGTGTTGGCCACATCTACTACGTGCTGGAGGACGTCTATCCTA
CACTGTCCAACGGCTACAGACTGATCAAAACCCCCTACTTTTTGAAACGT
CTCTTCAATGAGCACATCGAACGCAACTTCCAGGCGGCTGCTGAGGATCG
ACCTGGCGGATTTCCTTGGGGGCGGAGCGGGTCAGCCCCTGCTACCGGAA
GAGATTGCGGCTGATGGACAGGATGAGGAGCCAGCGAATCGAGCGGCGCC
TGTTGCTGCCGCGCCGCAGCAAGCTTTCTAGACCAT
FMO04184.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Der-2-RA | 1390 | CG14899-RA | 269..1051 | 35..818 | 3880 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16483262..16483784 | 644..122 | 2615 | 100 | Minus |
| 3R | 32079331 | 3R | 16483033..16483206 | 818..644 | 810 | 98.9 | Minus |
| 3R | 32079331 | 3R | 16483868..16483955 | 122..35 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:50 has no hits.
FMO04184.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:16 Download gff for
FMO04184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Der-2-RA | 263..1056 | 29..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:28 Download gff for
FMO04184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14899-RA | 443..1236 | 29..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:52 Download gff for
FMO04184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Der-2-RA | 263..1056 | 29..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:52 Download gff for
FMO04184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16483028..16483206 | 644..824 | 97 | <- | Minus |
| 3R | 16483263..16483783 | 123..643 | 100 | <- | Minus |
| 3R | 16483868..16483961 | 29..122 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:16 Download gff for
FMO04184.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12308750..12308928 | 644..824 | 97 | <- | Minus |
| arm_3R | 12308985..12309505 | 123..643 | 100 | <- | Minus |
| arm_3R | 12309590..12309683 | 29..122 | 97 | | Minus |
