FMO04188.5prime Sequence
1080 bp (985 high quality bases) assembled on 2008-08-22
> FMO04188.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCACTATTTGCG
TTTCTCAAGAGCCGCACTGCGTTCTGGCTGAGCTTCACCGGCACGACGAC
GGGACTGGCCTTCTTCGTGAAGGATCTTATGCAAGGCGGTCAGTTCACCA
AAGAAACCAATGAGACCGGCAAGGTGTTTATTGTCACCGGTGCCAACACG
GGGATCGGCAAGGAGACGGTGAGAGAGATTGCGAAGCGAGGTGGCACCGT
CTACATGGCATGCAAAAACCTAAAGAAATGTGAGGAGGCTCGCGAGGAAA
TCGTGCTGGAAACGAAGAACAAATATGTGTACTGCCGGCAATGTGACCTG
GCTTCCCAGGAGTCCATCCGTCACTTTGTTGCCGCCTTCAAGAGGGAACA
GGAGCACCTGCACGTACTGATCAACAACGCCGGTGTTATGCGCTGTCCCA
GATCTCTCACCTCAGATGGCATCGAACTTCAGCTGGGGGTTAATCACATG
GGTCATTTCCTGCTTACCAATTTACTGTTGGATCTACTCAAGAAATCCTC
ACCCAGTCGGATTGTAAATGTATCCAGTTTGGCACACACTCGAGGAGAAA
TAAACACTGGCGATCTGAACAGTGACAAATCCTACGATGAAGGCAAGGCC
TACAGCCAGAGCAAGTTGGCCAATGTACTCTTCACAAGGGAGTTGGCCAA
ACGATTAGAGGGCACCAACGTAACGGCGAATGCCCTGCATCCAGGTGTGG
TGGACACAGAAATAATCAGGCACATGGGATTCTTCAATAATTTTTTTGCT
GGACTCTTTGTTAAGCCTTTGTTTTGGGCCTTTGTTAAGACTCCGAGAAA
TGGTGCTCAGACCTCGTTGTATGTTGCTCTGGATCCCGAGCTAGAAAAGT
GACAGGACATACTTCAGCGACTGCAACTGAAGGAATGCGCCGGCTGCAAC
GACACCAAACGGCAAGTGCTTGGGCAGTCAGTGAAAGTGGACGAGCACGA
TGATAAAATACAAGCAAGCTTCTAGACATCGTTTGGCGCCGGGTCAAGGC
AATGGCATATCTATCTAATCATATCTAACA
FMO04188.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30491-RB | 1088 | CG30491-RB | 23..1015 | 36..1013 | 4555 | 98.2 | Plus |
| CG30491-RA | 1414 | CG30491-RA | 349..1341 | 36..1013 | 4555 | 98.2 | Plus |
| CG2065-RB | 1233 | CG2065-RB | 186..757 | 129..700 | 580 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7656154..7656415 | 541..802 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 7655571..7655737 | 122..288 | 820 | 99.4 | Plus |
| 2R | 25286936 | 2R | 7655944..7656100 | 386..542 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 7656471..7656597 | 802..926 | 520 | 97.6 | Plus |
| 2R | 25286936 | 2R | 7655792..7655891 | 286..385 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 7655420..7655506 | 36..122 | 435 | 100 | Plus |
| 2R | 25286936 | 2R | 7664040..7664174 | 129..263 | 435 | 88.1 | Plus |
| 2R | 25286936 | 2R | 7666696..7666901 | 552..757 | 280 | 75.7 | Plus |
| 2R | 25286936 | 2R | 7666153..7666243 | 129..219 | 245 | 84.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:23:19 has no hits.
FMO04188.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:13 Download gff for
FMO04188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 349..1341 | 36..1013 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:53 Download gff for
FMO04188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 293..1285 | 36..1013 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:38 Download gff for
FMO04188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 349..1341 | 36..1013 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:38 Download gff for
FMO04188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7655412..7655505 | 30..121 | 94 | -> | Plus |
| 2R | 7655571..7655736 | 122..287 | 99 | -> | Plus |
| 2R | 7655794..7655891 | 288..385 | 100 | -> | Plus |
| 2R | 7655944..7656100 | 386..542 | 100 | -> | Plus |
| 2R | 7656156..7656415 | 543..802 | 100 | -> | Plus |
| 2R | 7656472..7656697 | 803..1013 | 92 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:13 Download gff for
FMO04188.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3543299..3543396 | 288..385 | 100 | -> | Plus |
| arm_2R | 3543449..3543605 | 386..542 | 100 | -> | Plus |
| arm_2R | 3543661..3543920 | 543..802 | 100 | -> | Plus |
| arm_2R | 3542917..3543010 | 30..121 | 94 | -> | Plus |
| arm_2R | 3543076..3543241 | 122..287 | 99 | -> | Plus |
| arm_2R | 3543977..3544202 | 803..1013 | 92 | == | Plus |
