FMO04190.5prime Sequence
1005 bp (1005 high quality bases) assembled on 2008-08-22
> FMO04190.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTTTTCGTTC
ACGTTTCGGAGAAGGAGGGCGACGAGCCCATCGAGCTGCCGGCTGAGGAG
GATGGCACTTTGCTGCTGTCCACACTGCAGGCGCAGTTTCCGGAATCTAG
CGGTCTGCAGTACCGCAACGTGGACACGAAGGCGGTGCGTGGAGTTCGCT
CCAACGAGGGCCGACTGTATTCGCCCAGCGAAGAAACCGGCTGGGGCGAG
TACCATTACTTTTGCGTCTTTCCCAAGAAGAACAAGCGCCAGAGCGAAGA
TAACTTGGAAAACTCAACTGCCAAAACCAAGCGCACTGAGGCCCATCTGC
GCTGCTTTGATCTCATCGTGCTCGGCTTGTCCTATAACACCACCGAGCAG
GATTTGCGTGAGTACTTCGAGACCTACGGCGATGTGGTGAAGGCTGAGAT
CAAGAAGGACACCAGGTCGGGCCACTCCAAGGGTTTCGGGTTCGTGCGCT
TCGGCTCTTACGATGTCCAGATGCACGTACTCTCTAAGCGCCATTCAATT
GATGGTCGCTGGTGCGAGGTTAAGGTGCCCGCCTCGAGGGGCATGGGCAA
TCAGGAGCCTGGCAAGGTATTCGTCGGCCGCTGCACCGAGGACATAGAGG
CGGATGACTTGCGCGAGTACTTCTCAAAGTTTGGCGAAGTGATCGACGTG
TTCATTCCCAAGCCCTTCAGGGCTTTTAGCTTTGTAACCTTTCTCGATCC
GTATGTACCACGCGTCGTGTGCGGAGAGAAACACATAATCAAGGGAGTTT
CGGTCCATGTGTCGACTGCTGACAAAAGAACGTGCAGAACAAAAACCAAC
TGTTCCAGACCAACAACTACAACAATTTGGACAACAACTTTAAGATGCAA
CCGGCCAACAACTTTAGAATGCACCCAGCCCACAACTTTAGCATGCATTC
ATTTAATCCACATGGTTACCAAATGATCGCGTCATGACCGCAGCTTTCTA
GACCA
FMO04190.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7804-RB | 1782 | CG7804-RB | 401..1352 | 38..987 | 4695 | 99.7 | Plus |
| CG7804-RA | 1722 | CG7804-RA | 341..1292 | 38..987 | 4695 | 99.7 | Plus |
| TBPH-RF | 1930 | CG10327-RF | 119..955 | 38..873 | 2390 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15472627..15473578 | 987..38 | 4645 | 99.7 | Minus |
| 2R | 25286936 | 2R | 23860835..23861143 | 587..279 | 900 | 86.1 | Minus |
| 2R | 25286936 | 2R | 23861207..23861446 | 277..38 | 810 | 89.2 | Minus |
| 2R | 25286936 | 2R | 23860570..23860776 | 795..589 | 510 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:08 has no hits.
FMO04190.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:16 Download gff for
FMO04190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1297 | 38..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:18:56 Download gff for
FMO04190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1297 | 38..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:24 Download gff for
FMO04190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1297 | 38..993 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:24 Download gff for
FMO04190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15472626..15473578 | 38..988 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:16 Download gff for
FMO04190.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15465726..15466678 | 38..988 | 99 | | Minus |
