FMO04201.5prime Sequence
863 bp (824 high quality bases) assembled on 2008-07-30
> FMO04201.5prime
AACCCTTTCGGGACACACGATCTGGTGCACAATCTGCGTTGCAATAAGCG
CAGTCCGAAGGTTCGGCACCTCATGAAAAAGACAAGAGCCTGGCCCGGAG
CGCGATTTATGTGCGTTTGTAAGGAGGGAGACTTGAATACGGCTGCATAT
TGTTTGGCCGAGTTGATGCACGAGCCGTTCCAGCCATTTCCCATGGCCAC
CGTGGCAGTGCATCATTCGATCCGGGACGAGTTCATCGAGAGGGTGAGGA
GTCGGTTCAGGCAGCTAAAGCCACATGTGGCCAATCATCCGAATTTCATA
CGAGCCGTTAATGAGCTAAAGTATGGGTTGCGACCAGTGAAATATATTCT
GGCCGATGTGGCCGATGCTCCGGCCTGCGCCAGTCCCATCTTGGTGACGG
GAGGCGTCACCCACTTGTTCTTTCCCAGCGGACCCTCGGGATGTACCACC
CTGCATACCTTCAGTAGCATGCGGGAGGTGGCGCTGATCTTTGGCAAGGA
GACGCCCAAATTCGATGCGGTCTACTTCTTCGATGAGACCATCACAGGTG
TCTACATCTTGGCCAAGCTCATCAATTGTGTGCAGTTCTTTGTGAACTGC
ATGGATGCCTGCCTGATGGAGATTATGCCCCACTACTTGGACCACACGCC
CATGGTGGTCTACAAGCGAGGTTATCACTACGAGACCCTGGACTTGACCA
GCAGTGGAAGATCATCGTGTTCCCCTAACAGCACCTCCATTCTGAGGCAG
TGCTGCTGTCCCACTGGCCAGTGCCGTTGCTATGCCACCCATACGCCTGC
TGTGAGGATCATTTGCAGAGTGCAAGCTTTCTAGACCATTCGTTTGGCGC
CGCGGGCCCAGTA
FMO04201.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5623-RA | 1127 | CG5623-RA | 76..892 | 6..821 | 3895 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15766481..15767239 | 821..64 | 3545 | 98.7 | Minus |
| 3R | 32079331 | 3R | 15767306..15767363 | 63..6 | 275 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:23 has no hits.
FMO04201.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:57 Download gff for
FMO04201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5623-RA | 72..892 | 1..821 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:35 Download gff for
FMO04201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5623-RA | 72..892 | 1..821 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:50 Download gff for
FMO04201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5623-RA | 72..892 | 1..821 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:50 Download gff for
FMO04201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15766481..15767239 | 64..821 | 98 | <- | Minus |
| 3R | 15767306..15767365 | 1..63 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:57 Download gff for
FMO04201.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11592203..11592961 | 64..821 | 98 | <- | Minus |
| arm_3R | 11593028..11593087 | 1..63 | 93 | | Minus |
