FMO04205.5prime Sequence
1210 bp (1051 high quality bases) assembled on 2008-07-30
> FMO04205.5prime
TATAGCATACATAAAACGAAGTTATCAGTCGACATGCCCTCCAATGTGCC
AATAGTGCACCTGTACAATCGCGATGATCTGGAGAAGGTGCTGAAGTACC
CCAGCAAATACCCATTCCGACCTCCCACTGAGATCATCGTGATGTACCGT
CAATCCCGACCGGATCGCTATGCAAGTGTTGGAATTGTGAACGAGCAAGG
ACCAATGTGGCAGCGCCTACGATCTTCCCTGACCTCCAGCATTACTTCTC
CCAGGGTCCTGCAGAATTTCCTGCCAGCCTTGAATGCGGTTTGTGATGAT
TTTATCGAACTACTGCGAGCCAGGCGGGATCCGGATACACTGGTGGTTCC
CAATTTCGAAGAGCTGGCCAATCTGATGGGTCTGGAAGCTGTGTGCACTT
TAATGTTGGGCAGAAGGATGGGTTTCCTGGCTATCGATACCAAGCAGCCG
CAAAAGATCAGCCAACTGGCAGCTGCTGTTAAACAGCTTTTCATATCCCA
AAGGGACTCGTACTACGGTCTGGGTCTGTGGAAATACTTTCCCACCAAAA
CGTACAGAGACTTTGCCCGCGCCGAGGACTTGATCTATGATGTGATCTCC
GAGATCATCGATCATGAGCTGGAGGAACTCAAAAAGTCGGCTGCCTGCGA
GGATGACGAGGCTGCTGGATTACGAAGTATCTTTCTGAATATTCTGGAGC
TCAAGGATCTGGATATCAGGGACAAAAAGTCAGCGATCATAGACTTTATT
GCCGCTGGCATAGAAACGTTAGCCAACACTTTGTTGTTTGTACTGAGTTC
TGTTACTGGAGATCCCGGTGCTATGCCACGAATCCTAAGTGAATTCTGCG
AGTATCGGGACACGAATATCCTGCAGGATGCACTAACGAATGCCACATAC
ACAAAGGCCTGTATACAGGAGTCCTACAGACTGAGGCCCACAGCCTTTTG
CCTGGCCAGAATCCTGGAGGAGGACATGAGCTCTCGGCTACTCGCTTAAT
GCAGGACTGTGTGCTCTGTCAGATATGATAGCCTGCAACAGGACAGCAAC
TTCCAAGGGCCAGCAGTTTACCCCAAACGTTGAATTGATCTGCCCGGAAA
TTCACGGTGAACGTGGATAATGCAGAATGTGGTGCCCTCGGAGTGATTCA
AATCGTCCAGACGTATGCAATGAGGGGTCGTCCGTCATACTAAAGAGGTC
CTATCCCTGT
FMO04205.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shd-RD | 2985 | CG13478-RD | 1062..2181 | 34..1138 | 5090 | 97.9 | Plus |
| shd-RC | 1633 | CG13478-RC | 70..1189 | 34..1138 | 5090 | 97.9 | Plus |
| shd-RB | 2730 | CG13478-RB | 807..1926 | 34..1138 | 5090 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14619956..14620512 | 34..590 | 2740 | 99.5 | Plus |
| 3L | 28110227 | 3L | 14620812..14621051 | 768..1005 | 1100 | 99.2 | Plus |
| 3L | 28110227 | 3L | 14620578..14620755 | 591..768 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:25 has no hits.
FMO04205.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:51 Download gff for
FMO04205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shd-RB | 804..1934 | 28..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:13 Download gff for
FMO04205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shd-RB | 319..1449 | 28..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:32 Download gff for
FMO04205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shd-RB | 804..1934 | 28..1145 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:32 Download gff for
FMO04205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14619953..14620512 | 28..590 | 98 | -> | Plus |
| 3L | 14620578..14620755 | 591..768 | 100 | -> | Plus |
| 3L | 14620813..14621052 | 769..1005 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:51 Download gff for
FMO04205.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14613053..14613612 | 28..590 | 98 | -> | Plus |
| arm_3L | 14613678..14613855 | 591..768 | 100 | -> | Plus |
| arm_3L | 14613913..14614152 | 769..1005 | 98 | -> | Plus |
