FMO04206.5prime Sequence
630 bp (630 high quality bases) assembled on 2008-07-30
> FMO04206.5prime
TTCGTATAGCATAATAAAACGAAGTTATCAGTCGACATGATTCAGTACGA
TACTGTGCAGATCAAGAATGTATCATGGCAGCCGGAACTGCATACGGAGG
GCACCTATGTGTGCTCTTTTCCAGAGCCCCCGCTGCCGGAGGCCCATCTG
AAACCGGGCACCTGGCATGGCCATCTGGAGCCGTATCAGCGGCTCTTCTC
TCATCAAACGATGAACTCGGTGCGCTCGAGCAAGCGGTACCGTGCCAATC
CGAACATCCCGAAGGATACGCTGGACTTTTCGCTGCAGTCGCGCTACGAT
CACACCCGCGAAGCATTTCCGGACAAGGTGGACTACGTGATGCAGAGGGA
GACGTGCCGCGCCATAAGTAGCTGGTCAGCTCCTGGGGCGGCCAAGGAAA
TTGGTTCCCAACTCAATTCATTTCGGGTGTTGCGCAACACGCGCTTCATT
CGGCGCAAGCAGGAGGACGTATTGGGTCATCCACTTCGCATAGGCGGTTG
TAAGGAAAAGATTCATCCGCACAGCGTGAAGCTCATTTGCAGCGGTGTCC
ACAACCAGCTGGTGAACAATGGATTCTCGCGCCAGACCTGCGACGGCAAC
TTCTTCCGCTATGCAAGCTTTCTAGACCAT
FMO04206.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5435-RB | 929 | CG5435-RB | 106..681 | 37..612 | 2805 | 99.1 | Plus |
| CG5435-RA | 903 | CG5435-RA | 80..655 | 37..612 | 2805 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12430277..12430694 | 494..77 | 2060 | 99.5 | Minus |
| 2L | 23513712 | 2L | 12430075..12430195 | 612..492 | 560 | 97.5 | Minus |
| 2L | 23513712 | 2L | 12430746..12430787 | 78..37 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:40:23 has no hits.
FMO04206.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:10 Download gff for
FMO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5435-RA | 80..660 | 37..620 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:37 Download gff for
FMO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5435-RA | 107..687 | 37..620 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:26 Download gff for
FMO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5435-RA | 80..660 | 37..620 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:26 Download gff for
FMO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12430070..12430193 | 494..620 | 94 | <- | Minus |
| 2L | 12430278..12430693 | 78..493 | 99 | <- | Minus |
| 2L | 12430747..12430787 | 37..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:10 Download gff for
FMO04206.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12430070..12430193 | 494..620 | 94 | <- | Minus |
| arm_2L | 12430278..12430693 | 78..493 | 99 | <- | Minus |
| arm_2L | 12430747..12430787 | 37..77 | 100 | | Minus |
