FMO04207.5prime Sequence
588 bp (588 high quality bases) assembled on 2008-07-30
> FMO04207.5prime
TCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGACACTGTTTGC
CCTCATCGCCCTGCTCAGCCTGCTGAACACAATCCTGCCAGATTTCATAA
GGAACTACCTCAAAGTGTCGCGGTTGTGGGGCGTAAGGAACTCCGCGGAA
ATTCGGCAGTTGCAGACAGAACTGGACGATGCCCGGAAGCAAGTGGAGGT
GGTCAGCAATGCGGAGCATTCCGGAGAGTACGCCAGGACCATCAAAATTA
TGCGCGCCGAGCGTAAAGTATCAGAGGCGGAGGCGAAACTGAAATCTGCC
CGGGGAATGGAGAACTTCATGCGGATAAGCATCGATACGGCCATGTTCTA
CGGATCTAAGGTGCTGCTCTCAGCAATAACCGTGTTTATCAGCATCCGGA
ATCGTGGAACGCCCGTCATGATCATCGATGAAGCGATCAGCCTGGCTCCG
TTCACAGGACTTCTTAGTTTTCCTACTGGCGTGGCCAATGCCATTTCGGT
GCCCGCCTGGGCATTCTCCTGCAACCTGACATTTCGACTCATCTACGGCT
TTGTGAAAAATCGTGGGGCGGCAAGCTTTCTAGACCAT
FMO04207.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32022-RB | 938 | CG32022-RB | 240..774 | 36..570 | 2675 | 100 | Plus |
| CG32022-RA | 792 | CG32022-RA | 94..628 | 36..570 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8720444..8720905 | 570..109 | 2310 | 100 | Minus |
| 3L | 28110227 | 3L | 8720961..8721033 | 108..36 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:41 has no hits.
FMO04207.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:07 Download gff for
FMO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 88..628 | 29..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:15 Download gff for
FMO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 234..774 | 29..570 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:59 Download gff for
FMO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32022-RA | 88..628 | 29..570 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:59 Download gff for
FMO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8720444..8720905 | 109..570 | 100 | <- | Minus |
| 3L | 8720961..8721039 | 29..108 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:07 Download gff for
FMO04207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8713544..8714005 | 109..570 | 100 | <- | Minus |
| arm_3L | 8714061..8714139 | 29..108 | 95 | | Minus |
