FMO04212.5prime Sequence
1252 bp (1023 high quality bases) assembled on 2008-07-30
> FMO04212.5prime
TAGCATACATAATACGAAGTTATCAGTCGACATGGCACGCCTGGTGTTTA
CGGAGAAAGATCACAATGCATACGATCCCAAAAAGTATAAGGTGGTGCAC
AAGAACCACTGGCGACAGGTCAGCCTGCTGCTGCAGCCTTCCAACAAGAA
GTGGTGGGAGGATCCCGATGTCATTGTTGCTTTCAATTTACCGCGCATTA
GCGCCCGCCTGGAGCGTCTGATGGGCACCAATGTGGTCAAGCTAACGGAC
CGGAGCTACATGAAGGAGCTGCGGGAACGAATTGACGAGGATTACCGCAA
ACAGCTGCTGTCCCGCATTCGCGCCCGGGAGTTAAAAGAAGTGGAGCGCG
AACGAATGCTGATTATCGAGGGCAAGTCAGACGTAATACCAGACGAACTA
GCCAACGATCCCATATTCATGGTTAACAAAGATGCCAACATGGAGATTCA
AAAGGAGCGCTCCAAGCTGAAGACCGCTCGCGAGAAGAACGCGGAGCGTT
TGAAGCTGCAGGGCGTTAAATGGGAGCGGGAAAGGCTTCAACATGCCGCC
AAGGAAGCCGAACTGCTGGCCAAGAAACGCGAGCGGCACCGCCAACAGAA
ATTACTGGTGGAGCAGTACAGGACCGAGGATGCGGAGAGGGGAATGGATC
TGCTGCGCATCGATAACGAAGACTGGCGGGAGTGCGAAAAGAGCCTGAAG
GAGTTCCTCGAACAGGAGCGTGCCAAAATGAAAGAGCGTTCGTTGCGCAT
ATCCCAGCCCTACTCCTCGGATCCCCAGGATATACAGAATATAGTCAGGG
CCAGGCAAAAGTTCCGGGAGACCGAGCTGCGTATTCGCAATCAGCTGGAG
GACAAGCTAAAAGATGTCAAACTTGCGGTCACCACTCAACAACTAACCGA
ACTTATCGAGGATGCCCATCGTTTCAGCGGGGAGAATCATCATGCCCAAG
AACCTTTCGATGGAAGGACGATGACTTCCAAGGGGCGGCGCAGTGAACTC
CAAATATTTTGGACGATGCCACCGATGTCTCCGAGGAGACGGTGATCAGC
GAGGATGCCATCAGCTTGACGCTGGCCAAGCAGCAGTACGCGGAAGAAAC
TTGGAGGCGGAAATGGAGACGAGTTCATCCGAGGTCTGCTCATCTCTCAG
CACAGTACGAATCCACTGGCCTTCGAGGATGGAAAGAATTCGTGGCGGCT
CTAAAATTGCCAGAGATATATCCGCGCAGAGACGTGTATATCTTCACTCG
TT
FMO04212.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG46025-RA | 1837 | CG46025-RA | 162..1319 | 32..1197 | 5215 | 97.1 | Plus |
| CG46025-RC | 2036 | CG46025-RC | 162..1319 | 32..1197 | 5215 | 97.1 | Plus |
| CG46025-RD | 2435 | CG46025-RD | 710..1718 | 181..1197 | 4470 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7764753..7765090 | 803..1146 | 1125 | 92.5 | Plus |
| 2L | 23513712 | 2L | 7763504..7763696 | 465..657 | 965 | 100 | Plus |
| 2L | 23513712 | 2L | 7761885..7762039 | 181..335 | 760 | 99.4 | Plus |
| 2L | 23513712 | 2L | 7764540..7764688 | 657..805 | 730 | 99.3 | Plus |
| 2L | 23513712 | 2L | 7763308..7763444 | 330..466 | 685 | 100 | Plus |
| 2L | 23513712 | 2L | 7754458..7754549 | 89..180 | 460 | 100 | Plus |
| 2L | 23513712 | 2L | 7754335..7754396 | 32..93 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:30:52 has no hits.
FMO04212.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:25 Download gff for
FMO04212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7196-RA | 162..1287 | 32..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:52 Download gff for
FMO04212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7196-RA | 145..1270 | 32..1163 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:56 Download gff for
FMO04212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG46025-RC | 162..1287 | 32..1163 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:56 Download gff for
FMO04212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7754335..7754394 | 32..91 | 100 | -> | Plus |
| 2L | 7754461..7754549 | 92..180 | 100 | -> | Plus |
| 2L | 7761885..7762035 | 181..331 | 100 | -> | Plus |
| 2L | 7763310..7763444 | 332..466 | 100 | -> | Plus |
| 2L | 7763506..7763696 | 467..657 | 100 | -> | Plus |
| 2L | 7764541..7764687 | 658..804 | 99 | -> | Plus |
| 2L | 7764755..7765090 | 805..1146 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:25 Download gff for
FMO04212.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7764541..7764687 | 658..804 | 99 | -> | Plus |
| arm_2L | 7754335..7754394 | 32..91 | 100 | -> | Plus |
| arm_2L | 7754461..7754549 | 92..180 | 100 | -> | Plus |
| arm_2L | 7761885..7762035 | 181..331 | 100 | -> | Plus |
| arm_2L | 7763310..7763444 | 332..466 | 100 | -> | Plus |
| arm_2L | 7763506..7763696 | 467..657 | 100 | -> | Plus |
| arm_2L | 7764755..7765090 | 805..1146 | 93 | == | Plus |
