FMO04213.5prime Sequence
970 bp (970 high quality bases) assembled on 2008-07-30
> FMO04213.5prime
TAGCATAATAAAAAAAAGTTATCAGTCGACATGCTCTTTCCTTTTTCCGC
CCGAAAGGCGAATACATCCGCTGATTTTGTTGGCTTGCGGTCCGGATTCA
ACTTTATAAATTGCAGGCGAAATGCCGAGCTTTTGTCCAAGGGATATGAG
CCACCGAAGGCGATCAAAACAGGCACCTCCATTGTGGGCATCATCTACAA
GGACGGCGTTATCCTGGGCGCCGACACTCGCGCCACCGAGGGACCCATTG
TTTCCGACAAGAATTGCTCAAAAATTCACCACCTTCAGGATCACATATAC
TGTTGTGGCGCGGGCACCGCTGCCGACACCGAAATGATTACCCTGACGAC
CAGCGCCGAGCTGGATTTGCATCGGCTGAACACCGAACGACGGGTGCCGG
TAGTCTGTGCGAGCATGATGCTTCGCAGGACCCTCTTTCGCTACCAGGGC
CACATTGGTGCCGCCTTGGTGATGGGCGGCGTGGACACGACTGGGCCGCA
GCTCTACTGCATCTATCCGTGCGGTTCCAACGATAAGATACCCTACGCGG
CCATGGGCTCCGGCACCTTGGCAGCCATGTCGGTGCTGGAGCACGGCTGG
AAGCCCGATCTCGACCTGGAGCAGGGCAAGCAGCTGGTCCGCGAGGCCAT
CTCGGCGGGTGTGTTCAACGACCTGGGCTCCGGATCCAATATCGATCTAT
GCGTGATCACCGCAAAGGGAGCGGTTTACCTGAGAACCGATACGATTGCC
AGCGAGAAGGGCGAGCGGTTGGGCAAATACGGCATTAAGCCCAACTCCAC
TATGGTCACCTCGATCTCCGTGCTGAGTCTGCAGGTCACCGATGAGCGAA
TCTATGCAGTGGATGATCAACAGCCGGGCACCAGTGGCGTTCAGTTGGAT
TCCCAGCAAGCGGATGAGGAACTGCCCGAAGGATCGGCAAACTAAATCAC
CAGCAAGCTTTCTAGACCAT
FMO04213.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta2R1-RA | 1077 | CG18341-RA | 53..973 | 31..952 | 4465 | 99 | Plus |
| Prosbeta2-RA | 1034 | CG3329-RA | 209..401 | 149..341 | 335 | 78.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5809403..5810054 | 300..952 | 3110 | 98.8 | Plus |
| X | 23542271 | X | 5809151..5809331 | 119..299 | 890 | 99.4 | Plus |
| X | 23542271 | X | 5809006..5809094 | 31..119 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 15000229..15000347 | 149..267 | 280 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:05:31 has no hits.
FMO04213.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:42 Download gff for
FMO04213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R1-RA | 44..973 | 21..952 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:11 Download gff for
FMO04213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18341-RA | 1..924 | 31..953 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:29 Download gff for
FMO04213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R1-RA | 44..973 | 21..952 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:29 Download gff for
FMO04213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5808989..5809094 | 18..119 | 92 | -> | Plus |
| X | 5809152..5809331 | 120..299 | 99 | -> | Plus |
| X | 5809403..5810054 | 300..952 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:42 Download gff for
FMO04213.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5703022..5703127 | 18..119 | 92 | -> | Plus |
| arm_X | 5703185..5703364 | 120..299 | 99 | -> | Plus |
| arm_X | 5703436..5704087 | 300..952 | 98 | | Plus |
