FMO04214.5prime Sequence
685 bp (685 high quality bases) assembled on 2008-07-30
> FMO04214.5prime
TTCGTATAGCATACATAAAACAAAGTTATCAGTCGACATGTCGATCTTTG
ACCATCCCGAACAGCTGAAAATGCTGCAGGGCCTTCTGAATCCCAATCAG
AGAAGAGGCGGCATTGACTACAGCAGTAGCGAGGATGAGGAGGAGTCAAT
GGTTGTCAATAAGATGAACCCTGGAACAATTGGACGTCCTAATGGGGAGG
ATGGAACCGCTAAGGGTAAGAAGAAAAAGAAGCCCAACCCTTTGTGCACT
CCCTTGGTGGAGGAAGAGAAAAAACAGCCCGAGAGTCTGGAAGAATGGCA
AGATCAGCAGGAGAAGGAAGACATGGATATACTTGAATCGCGGAAGACTC
CCGAGTATACGATGACCTATCGCCAAGCAGTGGGCACTGAGGATGTTTTC
TTGCAGATGGGCAATCGCACTGGATCCTCGGCCAGCTGTGAGGACCTCAT
TTTGGAGGTTTCCCTGCCGGACGAGGAAATGACTGCTGACAAAATGTCGC
TCAGCTTGCAGGAAACTGAATTGGATTTGGGTACATGTTTGTACCGCTTA
CGATTACCGCTTCCCCATCCCGTCAATGTTGATCGTTGTCATGCAAAATA
CGATAGTGAGCTGAAGAAACTACGTCTCACTCTGCGCCTGCAGCGCGAAC
TAGACTATGTTAATTTTGCAAGCTTTCTAGACCAT
FMO04214.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5048-RA | 964 | CG5048-RA | 135..764 | 38..667 | 3105 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14685380..14685642 | 405..667 | 1285 | 99.2 | Plus |
| 3L | 28110227 | 3L | 14685084..14685322 | 168..406 | 1180 | 99.6 | Plus |
| 3L | 28110227 | 3L | 14684902..14685031 | 38..167 | 650 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 1949..2020 | 278..350 | 119 | 64.4 | Plus |
FMO04214.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:11 Download gff for
FMO04214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5048-RA | 126..767 | 28..671 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:03 Download gff for
FMO04214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5048-RA | 169..810 | 28..671 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:02 Download gff for
FMO04214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5048-RA | 126..767 | 28..671 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:02 Download gff for
FMO04214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14684889..14685031 | 25..167 | 94 | -> | Plus |
| 3L | 14685084..14685322 | 168..406 | 99 | -> | Plus |
| 3L | 14685382..14685645 | 407..671 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:11 Download gff for
FMO04214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14677989..14678131 | 25..167 | 94 | -> | Plus |
| arm_3L | 14678184..14678422 | 168..406 | 99 | -> | Plus |
| arm_3L | 14678482..14678745 | 407..671 | 98 | | Plus |
