FMO04216.5prime Sequence
824 bp (824 high quality bases) assembled on 2008-07-30
> FMO04216.5prime
CGTATAGCATACATAATACGAAGTTATCAGTCGACATGGACTCCCCGCTG
AACGATGGCTCTCACCATCCACCGCCGCACGCTCCCCACCCCCTGGCGGA
CTATCAGTTTTCTGCGGAGGAGGTGAAGGCGTTACGTGAGTGCAACACTG
AGTCTTTCTTCCAGCGCAGCCTGCCTTTCGGCACTGGACTGGGCCTGCTG
GCCTACTTCGGCGTCAAGAACGGCTATTTGCAGGGACACGTCAAGTACGG
CGCCGTGCCCAAGGTCGTGATGGGCGTCATTCTGGGCTACTTTGTGGGCA
AGTTCAGTTACCAGCAGAAGTGTGCCGAGAAGATCATGCGCCTACCCAAC
TCCCATCTGGGCGAGCTGCTGCGTCAGCGTAGACAGGGCGGCGGTGTCAT
CAGCTCCATCACACCGGACGAGAATCTGGGCAGGGCCTTCACTCTGGCCC
CCTTCTCGCCGAGCTCGGCGGACGTGTACAGCGATGAGGCGTATCAGCCC
GGGAGGAGCACTTCTCTCAATCTGGACACGGAATCGCGCCCTACTTTGTC
CGGCCTTGACGACATCTACCGCCCCACCCTGGACTCTGGTTCAATGCTGG
AGGCGGAGTTGCCCTTGGAGCCGTCTAAGCCGGGCCAGTCTTACGAGGAC
CTGCGACGAAGGAACCGAGAAGAGTACTCAAAGCACCAGCAGAGTCCATA
CTCGCGACCTTACGAACCACCAGTTGCCGTTCAACAGCGACCCGTGGAGC
AGGCACAAAGTGAACCCGCTGGAAGGAAGAACCAATACGGCGACTCCTGG
ACTGATGCAAGCTTTCTAGACCAT
FMO04216.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asrij-RA | 1064 | CG13533-RA | 245..1016 | 35..806 | 3815 | 99.6 | Plus |
| asrij-RB | 904 | CG13533-RB | 82..856 | 35..806 | 3775 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22886758..22887248 | 95..585 | 2455 | 100 | Plus |
| 2R | 25286936 | 2R | 22887310..22887530 | 586..806 | 1060 | 98.6 | Plus |
| 2R | 25286936 | 2R | 22886642..22886703 | 35..96 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:59 has no hits.
FMO04216.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:06 Download gff for
FMO04216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asrij-RA | 239..1020 | 25..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:21 Download gff for
FMO04216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asrij-RA | 239..1020 | 25..811 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:41 Download gff for
FMO04216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asrij-RA | 239..1020 | 25..811 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:41 Download gff for
FMO04216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22886636..22886702 | 25..95 | 94 | -> | Plus |
| 2R | 22886759..22887248 | 96..585 | 100 | -> | Plus |
| 2R | 22887310..22887534 | 586..811 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:06 Download gff for
FMO04216.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18774159..18774225 | 25..95 | 94 | -> | Plus |
| arm_2R | 18774282..18774771 | 96..585 | 100 | -> | Plus |
| arm_2R | 18774833..18775057 | 586..811 | 97 | | Plus |
