FMO04217.5prime Sequence
1040 bp (1040 high quality bases) assembled on 2008-07-30
> FMO04217.5prime
CTTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGAAGTCGATT
CAGGCCCGGTTGAACCACCGATTCCGAAAAACTTTGGCGATGGACAAGCC
GTCTAGCAGCAATAGCAATCGAATGAGCAGGAGCACTTCGAACTGCAGGA
GCCCGGCCATAATACGTAGTCCGCTGAACTCTGAGGAATTTCAGGACTCG
GCAACGGCTGCCGCCACACAACAACGGCTTTTCTGGAGCGGCCAGCGGGC
CTCGACGGCGGGCAGGGATGATAAAACCAAGCCTGATTCGACTGCCGCCG
GAAAAAAGAAGCCACCTACGACGACAAGGCAGTCAAATTTTACCCAGACC
GAACGAAGACGGACACATCGCAAGCTGAGTCCGCGGAGCACGCGTTGCAA
TTCGGTGGCAGTTACGGCGCTGGTCAGCAGAGAAAATATACCGCAAACAT
CCGGGTACAGAAGGCCAGAGGACCTAACCGCCCGGTGCAGTGCGTCGCAC
GAGGGGCGCAAGCTTCTGCAGGAGCGGCTGATGGTGCGGGTGGACGCACT
GTTCAACATGCTCTTCTCTGCCTCGCCGTTCCTGCAGAGCTTCCATGAGC
GGCGCAAGTCCACCGATCTGAATATGGGCGTCTGGGCGCGAAATGCCGGC
GGCCAGAATCAGCGCACTGTCTCAATGACTGTGGCACTTCAGGCGAACGT
TGGTCCCAAAACTGCCAAAATTACCGAGACACAGACCATGCGCGAGTGCA
GCCAACCCGGCCAACTGTACTCGATCGATGTGCAGAGCGTTAACGCAGAT
ATCCCCTACGCGGACACCTTCGTCGTCCTGATGCACTTCTGCCTGAAGGC
CACCGTGGAAGAGCACACGGACGTTTTGGTCTTTGCCGAGATCCAGTTTC
TCAAGTCCGTGTGGGCAGGGTCAAGACCTTTATCGAGAGGAACGCGTACG
CGGTCTCGAGGAGTTCTGTCAATCTCTATACAGCGCCCTACTGATTGAGA
TTAGGAGATGGCAGGCTTTCTAAGACCATTCGTTTGGCGC
FMO04217.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30284-RB | 1083 | CG30284-RB | 64..1033 | 39..1006 | 4770 | 99.6 | Plus |
| CG30284-RA | 1180 | CG30284-RA | 575..1130 | 453..1006 | 2730 | 99.6 | Plus |
| CG30284-RA | 1180 | CG30284-RA | 77..492 | 39..454 | 2050 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21650870..21651425 | 1006..453 | 2680 | 99.6 | Minus |
| 2R | 25286936 | 2R | 21651508..21651923 | 454..39 | 2050 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:10 has no hits.
FMO04217.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:39 Download gff for
FMO04217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30284-RB | 64..1043 | 39..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:08 Download gff for
FMO04217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30284-RB | 64..1043 | 39..1016 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:52 Download gff for
FMO04217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30284-RB | 64..1043 | 39..1016 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:52 Download gff for
FMO04217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21650860..21651424 | 454..1016 | 99 | <- | Minus |
| 2R | 21651509..21651923 | 39..453 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:39 Download gff for
FMO04217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17538365..17538929 | 454..1016 | 99 | <- | Minus |
| arm_2R | 17539014..17539428 | 39..453 | 99 | | Minus |
