FMO04218.5prime Sequence
987 bp (987 high quality bases) assembled on 2008-07-30
> FMO04218.5prime
CTTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGCCGGAATTT
GAGAACTTTAACGTAAAAACCACAATTGACTGCAAACAAGGTGCAGTGCG
AGCTGTGCGCTATAATGTTGATGGCACTTATTGCTTGAGTTGTGGATCTG
ACAAGAAGATAAAGCTGTGGAATCCGGCATCGGGATTACTGCTTAAGACT
TATGGTGGTCATGCGGATGAAGTCACCGATGCGGCGGGAAGCTGTGATAG
TAGCTATATCGTTTCCGCCAGCTTGGATAAAAGCATTATCTACTGGGACG
TGTCAACGGGAGCACCAGTACGGCGCCTGCGTAGCCATGCCGGAGGTGTT
AGATGCGTCTGCTTCAACGAGGACTCCTCGATAGCCATTTCCGGGGGTCG
AGATAATGCCGTAATGTGCTGGGACATTCGAACGCGTCGCCTGGATCCCG
TTCAGGTGATGAAGGAGACCCGGGACTGCATCACCACGGTGGCAACCAAC
GAGAATCGCATCTACGCCGCCTCCTTGGACGGATGTGTGAGGACCTACGA
TATTCGGGTGGGCGAACTTACCTGCGACAAAATTGGTGAACCCATCACAT
ATCTGGCGCAGACGCGCGACGAGCAATGTCTGGTGGCCGGCTGTCAGGAT
AGTGTGGTTCGTCTGCTGGACTGTGAGACCGGCGGATTACTCTCCGAGTA
CAGGGGACATCGCGGCGATGACTACCACATCGAGTGCGGAATACTGTCAA
ACGATGCCCAAATAGTCACGGGCTCCAGTGATGGAGACGCCTTTGTTTAC
GACCTGCTCGATGGGAAAGTACTGCAGCGCATTCGCATAAGTGATAATGG
CGGCGTCGTCCACTCCTTAGCCACTCATCCCAAGCGACAGGAAATGCTTT
TCGCCAGACGACGGGACATGTATGTCTTCTCGACAGATTTGCAAATCGAA
GAGGAGCAATTAGCAACTTTTCTAGACCATTCGTTTG
FMO04218.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4935-RA | 1083 | CG4935-RA | 60..983 | 39..962 | 4605 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16262649..16263182 | 309..842 | 2655 | 99.8 | Plus |
| 2L | 23513712 | 2L | 16263262..16263383 | 841..962 | 610 | 100 | Plus |
| 2L | 23513712 | 2L | 16262338..16262458 | 117..237 | 605 | 100 | Plus |
| 2L | 23513712 | 2L | 16262200..16262282 | 39..121 | 400 | 98.8 | Plus |
| 2L | 23513712 | 2L | 16262520..16262594 | 236..310 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:09:23 has no hits.
FMO04218.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:56 Download gff for
FMO04218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4935-RA | 60..983 | 39..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:41 Download gff for
FMO04218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4935-RA | 78..1001 | 39..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:27 Download gff for
FMO04218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4935-RA | 60..983 | 39..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:27 Download gff for
FMO04218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16262200..16262278 | 39..117 | 100 | -> | Plus |
| 2L | 16262339..16262457 | 118..236 | 100 | -> | Plus |
| 2L | 16262521..16262593 | 237..309 | 100 | -> | Plus |
| 2L | 16262650..16263180 | 310..840 | 99 | -> | Plus |
| 2L | 16263262..16263383 | 841..962 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:56 Download gff for
FMO04218.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16262200..16262278 | 39..117 | 100 | -> | Plus |
| arm_2L | 16262339..16262457 | 118..236 | 100 | -> | Plus |
| arm_2L | 16262521..16262593 | 237..309 | 100 | -> | Plus |
| arm_2L | 16262650..16263180 | 310..840 | 99 | -> | Plus |
| arm_2L | 16263262..16263383 | 841..962 | 100 | | Plus |
