FMO04219.5prime Sequence
923 bp (923 high quality bases) assembled on 2008-07-30
> FMO04219.5prime
TATAGCATAATAAAACAAAGTTATCAGTCGACATGGTGCTTCTCCAGGTG
AAACGCGGAGACGAGCTTATCTTCCTCTATGAGACAAGCGTTAAGGAGAA
GACCGATACTGTGCTTCGCGAGCTTGTGGCTCTGCACAATGGTCAACTGA
AGATTCAGCGTGTCTGCATGGAGATTGAGGAGCTGGCCGAACATGGCACC
ATGGTGCCGCCTGAAATGATTGGCCTCAACGAGGAACAGAGGGAAGAGCT
CAAGCTTAAGGATGTCTGGGCGGATAAGTGCATCCCGTCTGGTGGTTTCA
CTATCAACAAGGATCCGCTCCTTCGCCGTAACGGACAGCAGCCAACTGAG
GCGATGCAAAAGGTCCTTGCAGGTGCCATGAACGACGCCAAGGCTATGGT
GGATCGGCGCTTAGCTAAATCCTCAAAGACCTTGACCCCAAAGATCGTTG
AGGAGGCGTTGAACCTCCTGCGTGGTGGTGTCACTATTGTATATCCCATG
CAATTGCCGCCCCACGACTCCATACGCATGGAGTTCACCAATACCGAGGA
TCTGACTGGCACCCAGGCCTCCAAGGAGGTCATCGAACCGTCCAAGGCTC
AGTTCTGGTTTGCAGGACACCAGATGCTGATGGGGAAGCTAATGAGCGAC
TATTTGGGTCACAACGACAAAACCAAGGTGGTCGTGAAGCTGAATCAAAT
TGGTGAAGGACCACCGGGACGCGAAGCCGTGATCTCCGATCCCTTGCGTC
GCCAGATGATGGCCGAGGCCTATCGCCGCCAGGAGGAACTCAAGAAACTT
GAGCAAGACGATGACGACGAGTATCTCAACTCCTCCTGGGCCGACAGCGG
CAGTCTGAAACGTCAGGCGCATGGTCTGGAAAATGTTAGATTCCGATTCA
GAAAAGCAAGCTTTCTAGACCAT
FMO04219.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18675-RA | 1608 | CG18675-RA | 66..942 | 29..905 | 4310 | 99.4 | Plus |
| tipE-RB | 3938 | CG1232-RB | 2341..2452 | 794..905 | 560 | 100 | Plus |
| tipE-RA | 3396 | CG1232-RA | 2487..2598 | 794..905 | 560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4173949..4174327 | 29..407 | 1835 | 98.9 | Plus |
| 3L | 28110227 | 3L | 4174393..4174665 | 407..679 | 1365 | 100 | Plus |
| 3L | 28110227 | 3L | 4174724..4174842 | 676..794 | 580 | 99.2 | Plus |
| 3L | 28110227 | 3L | 4192190..4192302 | 793..905 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:15:39 has no hits.
FMO04219.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:24 Download gff for
FMO04219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18675-RA | 57..947 | 21..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:05 Download gff for
FMO04219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18675-RA | 88..978 | 21..911 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:00 Download gff for
FMO04219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18675-RA | 57..947 | 21..911 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:00 Download gff for
FMO04219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4173941..4174327 | 20..407 | 97 | -> | Plus |
| 3L | 4174394..4174663 | 408..677 | 100 | -> | Plus |
| 3L | 4174726..4174842 | 678..794 | 99 | -> | Plus |
| 3L | 4192192..4192307 | 795..911 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:24 Download gff for
FMO04219.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4173941..4174327 | 20..407 | 97 | -> | Plus |
| arm_3L | 4174394..4174663 | 408..677 | 100 | -> | Plus |
| arm_3L | 4174726..4174842 | 678..794 | 99 | -> | Plus |
| arm_3L | 4192192..4192307 | 795..911 | 97 | | Plus |
