FMO04221.5prime Sequence
1138 bp (1015 high quality bases) assembled on 2008-07-30
> FMO04221.5prime
GCATACATAAAACGAAGTTATCAGTCGACATGCGCCAGCCCTTCCGCCGA
GCCTCCGTCTACCTCCACCTGCTGTTAATAACCGAGGCCGTGATCGGACT
GCTGATCCTGGTGGTGACCGCCTACTACCACACCGTGCTCACCGGCTATC
TATCGGATATTGAGTGCCGCCTGGTCTACGGCTATCTGTTTGGGATCTAC
GTGTTTGGCGCCCAGGTGGTGGTGACCTTTCTCTGCAGCATTGCCATGTG
GCGGCGAATTTGGCGGCGTCGCTGCACGCCGAACATTCGCCTCTTGCTAT
CCGTGTGGGCCTTCTACTCCTGCGTAATCATTGCCTCCGGTTTCGGGTGC
GTTTGGAATCTTTACCGGGGTGTCGATGTCCTCGAGAATGCGGCGGACAC
CTCGCTGACCCGCGGCATCGACATGTACTACTCGTGTCCCGAGTGGAAAC
TCCTGTGGGACGGACTGCAGTGGCACAAGGAGTGCTGCGGGGTGCATGGC
TACAAGGACTGGATGAACGCGGAGTGGATGCCACGGCGGGAGAATAACTG
CACGTCGATGGTCCTGGCACCCTTCGCCTGCTGCAAGCGCTCCTGCGACA
GCTGCTTTAACAATTTCCTGCCCAGTGAGGGGCAGTCCATCGGTGGCAAT
AGCCGGCAGCCTTTTCCCGCTCTCACCGTGGACTCAATCAATGCGAACGG
ATGCTTGCCTGCGTTCGTTAGTGCGGTGTGGAACTGCTTTTACATCCTGA
TGGCGTTATGGGTCCTGGCCCTTAAGTTTCTGATCGTGCTTTGTTGTATG
ACCAAGTTCATAGTTCACCGGCAGAACGAGGGCGATGGCTGCGATAATGT
GGGGCTCACGGACGATGATGGCCATCCCTTGGTCGTGGTGAAATATCCGT
GCACCGTGCGCTGTGTGACAATTGCCGAGGATGATCTGTATCCGACACCG
TTCCCGATATTAACTACTGCAATTGCACCGAAATGGACGACGAACCGGTG
TGATACCGCAGCTTTTCTAGACCATTCGGTTTGGCCGCCCGGGGCCCAGG
TAGGTGGTCCATATCCATATCATATCATTATCCATATCCACCACCTAGCC
CTAGGAGAATCCTGGGCTATGACTAGTGCCTGATCTTC
FMO04221.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp33B-RA | 1111 | CG14936-RA | 63..1031 | 30..997 | 4730 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11791551..11792303 | 782..30 | 3765 | 100 | Minus |
| 2L | 23513712 | 2L | 11791268..11791376 | 890..782 | 515 | 98.2 | Minus |
| 2L | 23513712 | 2L | 11791105..11791213 | 997..890 | 435 | 95.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:14:20 has no hits.
FMO04221.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:14:57 Download gff for
FMO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp33B-RA | 63..1040 | 30..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:09 Download gff for
FMO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp33B-RA | 63..1040 | 30..1006 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:10 Download gff for
FMO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp33B-RA | 63..1040 | 30..1006 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:10 Download gff for
FMO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11791096..11791212 | 891..1006 | 94 | <- | Minus |
| 2L | 11791268..11791375 | 783..890 | 98 | <- | Minus |
| 2L | 11791551..11792303 | 30..782 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:14:57 Download gff for
FMO04221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11791268..11791375 | 783..890 | 98 | <- | Minus |
| arm_2L | 11791096..11791212 | 891..1006 | 94 | <- | Minus |
| arm_2L | 11791551..11792303 | 30..782 | 100 | | Minus |
