FMO04223.5prime Sequence
1205 bp (1049 high quality bases) assembled on 2008-07-30
> FMO04223.5prime
GCATACATAAAACGAAGTTATCAGTCGACATGATTAGTGGCTCTGGGAGT
CGGACGCCCTCAAATCGACTTTATTTGTCGCCCGTTCGCCCCACGATGCA
GAACAAACGGAGGCTTCTGCGGGAGTACAGGTCCTACGATGACCTCAGCG
AGCACTACCGCATGTTTGGATCGCAGTCCCTGGACTCGCTGCAGGATCGC
GTGGACATGAATCCCAGTGGCTGCGATGGCTTATCCACGGACGGACTCGA
CTTCTGCTCGCAGTCCCACTCGGGGCTGCTGAGGGAGCACAATTTCAAGA
TTAAGTCCTACTACTACAACGTGGGGAACTGCGTACACTGCCGCAAAAGG
ATCCGCTTCGCCATGGCCAGCCTGAGGTGTCGGGCGTGTCCGCTCCGCTG
CCACATCGGTTGCTGCCGCCAGCTGACGGTGAACTGCATCCCCCAGCCTC
AAATCGGTACGAAGAGAGGATGTCTCAGCGATTATGCGCCTCGGGTGGCG
CCCATGGTGCCGGCCTTAATTGTCCATTGTGTAACGGAGATCGAGGCGCG
GGGATTGCAGCAGGAGGGACTCTACCGGGTGTCCTCCACCCGAGAGAAAT
GCAAACGACTGCGTCGGAAGCTGCTGCGTGGCAAGTCCACGCCGCATTTG
GGCAATAAAGACACCCACACACTGTGCTGTTGTGTTAAGGACTTTCTTCG
GCAGTTGGTTCACCCTCTGATTCCCATTTACCACCGAAGGGATTTCGAGG
AGGCCACGCGGCACGAAGATCGTCTGGCTGTGGAGATGGCGGTATATTTA
GCGGTTCTGGAGCTGCATCAGCTCACAGGGATACGTTGGCCTACTTAATG
CTTCACTGGCAGAAAATTGCCGAAAGTCCTGCTGTCCGCATGACGGTCAA
CAATCTTGCCGTGATCTTCGCTCCAACTCTGTTCGGAGATCTGGATCTAA
CCCTCGAAAATGTCGTCACTTGCAGCGGGTGCTGAGTGCTACTTCTGATG
CCTGCCGATTTGTCTCAGTCTTGAGTCATCCCCTTCCCACTTCGTTGGGC
AGCACTTTGACTTTGAGACGGTACATCACCGTCACTGGAAAGGCTCGTCA
ATTGGATGGACTTCCGTAAGAACTACTTTGGATCAATGTCCAACTTAACG
AATACTAGACAGCTTCGAGACATTCGTTGGCCGCGGGTCCAGTTAGAGGT
GGACT
FMO04223.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RacGAP84C-RB | 1354 | CG2595-RB | 144..1271 | 30..1138 | 5065 | 97.6 | Plus |
| RacGAP84C-RA | 1412 | CG2595-RA | 144..1271 | 30..1138 | 5065 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7286559..7287222 | 348..1007 | 3155 | 99.4 | Plus |
| 3R | 32079331 | 3R | 7286105..7286425 | 30..350 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:04 has no hits.
FMO04223.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:56 Download gff for
FMO04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RacGAP84C-RA | 144..1236 | 30..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:16 Download gff for
FMO04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RacGAP84C-RB | 743..1835 | 30..1105 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:02 Download gff for
FMO04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RacGAP84C-RA | 144..1236 | 30..1105 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:02 Download gff for
FMO04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7286105..7286424 | 30..349 | 100 | -> | Plus |
| 3R | 7286561..7287314 | 350..1088 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:56 Download gff for
FMO04223.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3111827..3112146 | 30..349 | 100 | -> | Plus |
| arm_3R | 3112283..3113036 | 350..1088 | 97 | == | Plus |
