FMO04224.5prime Sequence
918 bp (608 high quality bases) assembled on 2008-07-30
> FMO04224.5prime
TCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGATGATCCATC
CGCCACGCTCTTGCCCGAACACTCGGAAGATTTGCGGCTGGCTCGCGATG
CGGAGCTGAAGAAGGTGCTCAAGCTGAAGCTAGTGCTGGACGAGCTAAGA
CGCCTGGATGTGGGCCCAAATCCGAGTGATGAAATCAAAAGAGCCCTCAA
ATTGGTTTCCATTGGAAGTTATGCGCGACTCGGCGAGATGGAGGGAGCTG
GTCAGGAGCAGGTGCTTGGTCTACCGAGCGGCAGCAGTTTTCCGCCCTTG
AATTACACGGATCGCAAGACGGTGCGTACCAAATTGTCCGCTCAATTACG
CACAACTCTGCAACCCATTGCCGAATTGTGCGACAGGATACGCGAGGAGT
TCCCGGACGCCTTTGGCCAGGAGGCGGACTTAAGCTGCGACCAAAAGGAG
ATTCTGCGCCTGGAGGAGGAGCATCGCAGCGGTCTGGAGAAATTGGTTGC
GCTTCTCACTCGTAAGTGCACGCTTCTCAAGGAGACCGCCGATTGAAATT
GGGGCCGCAGTTGGCAAACGAACTAAAATTGCACAGCGCAGCGCAACTTG
TCAAACAAAGCAGACTACTGCGGGATTTTCGTCACGAGGCCGCCTCCCGC
ACGACATAGCGTCAGCAATAGGAGGTGGGAGCCCACTGACGACTGCTCGC
CCCAAAAGCAAGCTTCTAACATCGTTGGCCGCGGGCCAGTAGGCTACTAT
CTATCTCTATCCCAACTGCCTAGGAATCCGCAGACAGGGCTGGATTCCCA
ATAAACGCGCGGGGCACAGAGGTTCGAAACAGGGTTCAGCTTTGGTATTC
AGAGCGAGCTTTTATCGCGCGCTGCACCTAGTGTATATACTCGCGAGCAA
CCAGGAGAGTACTAGTCG
FMO04224.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dgt2-RB | 987 | CG16969-RB | 89..772 | 37..701 | 2895 | 96.6 | Plus |
| dgt2-RA | 842 | CG16969-RA | 89..772 | 37..701 | 2895 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11990312..11990628 | 268..583 | 1535 | 99.7 | Plus |
| 2L | 23513712 | 2L | 11990024..11990257 | 37..270 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:01:40 has no hits.
FMO04224.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:23 Download gff for
FMO04224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 82..737 | 29..670 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:02 Download gff for
FMO04224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 54..709 | 29..670 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:42 Download gff for
FMO04224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dgt2-RA | 82..737 | 29..670 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:42 Download gff for
FMO04224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11990017..11990255 | 29..268 | 98 | -> | Plus |
| 2L | 11990313..11990772 | 269..708 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:23 Download gff for
FMO04224.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11990017..11990255 | 29..268 | 98 | -> | Plus |
| arm_2L | 11990313..11990772 | 269..708 | 94 | -> | Plus |
