FMO04225.5prime Sequence
926 bp (926 high quality bases) assembled on 2008-07-30
> FMO04225.5prime
GTATAGCATACATAAAAAAAAGTTATCAGTCGACATGAGTGCGGAACCAA
GTCCGGTAATGAGTCCCCAGCAGCAGGCCGAGCGGGAGAAGGTGTACCAG
TTGATCATCGAGCTGGCCTATCCTGCCACGCGGGAGACCGCTCTGCTGGA
GCTGAGCAAGAACACCTATGCGGACCTGGCCCCCATGCTGTGGAAAAGCG
TCGGTACCACCTGCACCCTGCTGCAGGAGATCGTCAACATATACCCCATA
ATAACGACGCCCGTTTTGAAGGCCAACCAGTCGAACCGCGTGTGCTACGC
CCTGACTTTGCTACAGTGCGTCGCCTCGCATCCGGAGACTCGCCCGGCCT
TCCTGCGGGACCAGATACCGATGTACTTGTACCCCTTCTTGTCGACCACG
TTCAAGAGCAGGCCCTTCGAGCAGCTGCGCCTGACCACGCTGGGCGTGAT
TAATGCTCTGGCCGAGACCGGTGATACGGAGGTCCTCATCTTCCTGATAT
GGAGCGAGGTCGTGCCTCACTGTCTGACCAATATGGTCAGGGGATCGAAG
CTGACCAAGATCGCGGCCACTTCAATCCTTGAGAAGATACTGCTCGATGA
GATGGGTCTGACGTACATTTGCGAGAACCACGATCGCTTCTCGCAGGTGG
CCATCACCCTGGGCAAAATGGTCATCCATATGTTGAAGTTTTCCATGCCT
CCGGGTGCTGAAGCATGTGGTGCGCTGCTATCTACTACTTACGGAAAAAT
GCGCGCGCTCGCAGTGCACTTAGAGTGTGTCTGCCCGATCTGCTGCGTGA
CGGCACCTTCACGTCGCTCGTCCAACATGACACGTGCACCAAGCAGTGGC
TGCAGATGCTGCTCAAGAACCTGCAGACAAACGCCGTCCACCCAATGGGC
TCCTCCCGCAAGCTTTTCTAGACCAT
FMO04225.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd-1r-RA | 1184 | CG9573-RA | 147..1016 | 35..906 | 4265 | 99.4 | Plus |
| CG13102-RB | 1835 | CG13102-RB | 739..1608 | 906..35 | 4265 | 99.4 | Minus |
| Rcd-1-RA | 1612 | CG14213-RA | 482..1285 | 68..873 | 1835 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9013053..9013922 | 906..35 | 4215 | 99.4 | Minus |
| X | 23542271 | X | 19639444..19639815 | 90..461 | 1020 | 84.9 | Plus |
| X | 23542271 | X | 19639934..19640091 | 505..662 | 340 | 81 | Plus |
| X | 23542271 | X | 19640301..19640419 | 755..873 | 280 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:06 has no hits.
FMO04225.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:14 Download gff for
FMO04225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13102-RB | 730..1610 | 31..913 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:16 Download gff for
FMO04225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9573-RA | 147..1027 | 31..913 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:26 Download gff for
FMO04225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13102-RB | 730..1610 | 31..913 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:26 Download gff for
FMO04225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9013044..9013929 | 29..913 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:14 Download gff for
FMO04225.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9013044..9013929 | 29..913 | 98 | <- | Minus |
