FMO04226.5prime Sequence
1210 bp (1013 high quality bases) assembled on 2008-07-30
> FMO04226.5prime
ATAAAACGAAGTTATCAGTCGACATGGCCGTGCCCTTTTATTTGCCCGAG
GGCGGCGCCGATGACGTAGCGTCGAGTTCATCGGGAGCCTCGGGCAACTC
CTCCCCCCACAACCACCCACTTCCCTCGAGCGCATCCTCGTCCGTCTCCT
CCTCGGGCGTGTCCTCGGCCTCCGCCTCCTCGGCCTCATCTTCGTCCTCC
GCATCGTCGGACGGCGCCAGCAGCGCCGCCTCGCAATCGCCGAACACCAC
CACCTCGTCGGCCACGCAGACGCCGATGCAGTCTCCACTGCCCACCGACC
AAGTGCTATACGCCCTCTACGAGTGGGTCAGGATGTACCAGAGCCAGCAG
AGTGCCCCGCAAATCTTCCAGTATCCGCCGCCAAGCCCCTCTTGCAATTT
CACGGGCGGCGATGTGTTCTTTCCGCACGGCCATCCGAATCCGAACTCGA
ATCCCCATCCGCGCACCCCCCGAACCAGCGTGAGCTTCTCCTCCGGCGAG
GAGTACAACTTCTTCCGGCAGCAGCAGCCGCAACCACATCCGTCATATCC
GGCGCCATCAACACCGCAGCCAATGCCACCGCAGTCAGCGCCGCCGATGC
ACTGCAGCCACAGCTACCCGCAGCAGTCGGCGCACATGATGCCACACCAT
TCCGCTCCCTTCGGAATGGGCGGTACCTACTACGCGGGCTACACGCCGCC
ACCCACTCCGAACACGGCCAGTGCGGGCACCTCCAGCTCATCGGCGGCCT
TCGGCTGGCACGGCCACCCCCACAGCCCCTTCACGTCGACCTCCACGCCG
TTATCGGCGCCAGTGGCGCCCAAGATGCGCCTGCAGCGCAGCCAGTCGGA
TGCGGCCAGACGCAAGCGATTGACCTTCGACGGGCGAGGATGAGCGCGAG
TACCAGAGCGATCATGAGGCACTTGGGACGGAGTTTGGCGATCGCTACGA
CAACTTTACGGCCGGGCGGGAGCCGTCTGCAGGAGTTCAATGGACGCATC
CCGCCCCGGAAGAAGAAGAGCTCATAGCCACTCGAGCAGCAGCATAATCC
AGTCTGCATAACCGATAGCCAGCCCGGTGGTACACTTCCAGGCGGGAAGG
CGGGTGCCATCCATGGGCCCCATCAGTCAGCACGGAAGGTGGAAGCGAGA
ACGACAATCCAGTCGAAGAAAGAATCCACGGCTCCTGTCACACTGGTTGT
GGAACCGTAT
FMO04226.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hid-RB | 2190 | CG5123-RB | 520..1650 | 24..1157 | 5215 | 98 | Plus |
| hid-RA | 4018 | CG5123-RA | 520..1650 | 24..1157 | 5215 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18173047..18173555 | 862..354 | 2545 | 100 | Minus |
| 3L | 28110227 | 3L | 18184792..18185122 | 354..24 | 1655 | 100 | Minus |
| 3L | 28110227 | 3L | 18172081..18172373 | 1157..862 | 765 | 90.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:42 has no hits.
FMO04226.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:21 Download gff for
FMO04226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| W-RA | 514..1659 | 16..1168 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:06 Download gff for
FMO04226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| W-RA | 510..1655 | 16..1168 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:17 Download gff for
FMO04226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hid-RA | 514..1659 | 16..1168 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:17 Download gff for
FMO04226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18172072..18172372 | 863..1168 | 91 | <- | Minus |
| 3L | 18173047..18173554 | 355..862 | 100 | <- | Minus |
| 3L | 18184792..18185126 | 16..354 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:21 Download gff for
FMO04226.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18165172..18165472 | 863..1168 | 91 | <- | Minus |
| arm_3L | 18166147..18166654 | 355..862 | 100 | <- | Minus |
| arm_3L | 18177892..18178226 | 16..354 | 98 | | Minus |
