FMO04228.5prime Sequence
712 bp (712 high quality bases) assembled on 2008-07-30
> FMO04228.5prime
TTCGTATAGCATACATAAAACAAAGTTATCAGTCGACATGGCGCACCGCC
TCCAGCTCCGTAGCGATGACTTCGACGTTATCGGCGCCGTGCCCCGCAAT
CTGTCCGTGATCAAGAACTTCCTGAAGCGGGACTGTGCCATCAAGAAACT
GATCGACATCGAGGAGGAGTTCCTGCAGGAGTGCGTATTACGCGGCCAGG
ATCCCATGAATCCGAAGGGTAAACGTGACAGTGACAGTGGGCCACATGGT
AGTGGTTTGGGATCCAATGTGCCCGAACCCAAGCCGGATCCATGTGCTAC
CAAGACACCGGAGAACACATTGGCCTCCGACTACTGTGATCCCTGTCGCC
GACTCAAGACCTCCGTGGTTCTCGAAGAGCTAACCAAGCCGGCCATCACA
AATCCGGCTTTCAACAAATCCCTGCCGCCGTACTTCGATGAAGAGAGCGT
GATGGGCAACTCGTTGCCCGTGAAGTTCCGTTTCCGGCGCAAGTTCAACA
AGTGCGACCAGGAGAAGGCCGGCAACCTGATGTGCACCAACACGCCGAGC
ACCAATGTGGTCGTGTTGACCAACTGTTGCGATGTGATGGTCTGGCCCAG
TCAACGGGTGGCCCAGATGAACCGGGTGCCGGTGACCATGCTGTCGGGCG
AAGCCGATCTCACGGAGTACATGCTGGAGGAGGAGACCATTATGGCAAGC
TTTCTAGACCAT
FMO04228.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4286-RA | 821 | CG4286-RA | 99..756 | 37..694 | 3230 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21178196..21178538 | 379..37 | 1670 | 99.1 | Minus |
| 2R | 25286936 | 2R | 21177819..21178135 | 694..378 | 1570 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:51 has no hits.
FMO04228.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:42 Download gff for
FMO04228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 96..756 | 31..694 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:13 Download gff for
FMO04228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 96..756 | 31..694 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:49 Download gff for
FMO04228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4286-RA | 96..756 | 31..694 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:49 Download gff for
FMO04228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21177819..21178133 | 380..694 | 99 | <- | Minus |
| 2R | 21178196..21178544 | 28..379 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:42 Download gff for
FMO04228.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17065324..17065638 | 380..694 | 99 | <- | Minus |
| arm_2R | 17065701..17066049 | 28..379 | 97 | -> | Minus |
