Clone FMO04232 Report

Search the DGRC for FMO04232

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:42
Well:32
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG42336-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04232.5prime Sequence

463 bp (463 high quality bases) assembled on 2008-07-30

> FMO04232.5prime
TAGCATACATTAAACAAAGTTATCAGTCGACATGAGTTGGTCGGGTTCCA
GTGACGAGCTCGGGGTTATTGAGCAGCTGAAAAAGTCCGTGGAGTCGATC
GTGGCCAAAACTGGGCCCAGCAGCAAGTTCTCCAAGGATCTCGTCCAGCG
GATCGGCGAGATGCAGAGCAAGCTGGAGTCCCTGGCCGAAACGGATCGGC
ATGTGTTTCTCGCCGAGATGAAGGACAAGTTCCAGCAGACGATTGGCAGA
ATCGAGGAGCGAATAGTGCAGCACGCCCATTTCGCACAGACCTACTCCAG
TTCCATAGTGTCGGCAGTGATCTTTCTCTTGGTCTCCATATTCGCTCTCT
TTGGCTACAAGCTGTACAAATCCCTGACGGAAAAGGAGCTCAAGAAGCAG
GAGAAACTGAAGAGCAAGCAACAGAAGAAGGCCAAGAAGTCAAACGCAAG
CTTTCTAGACCAT

FMO04232.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG42336-RC 747 CG42336-RC 183..598 30..445 2080 100 Plus
CG42336-RD 707 CG42336-RD 71..390 30..349 1585 99.7 Plus
CG42336-RD 707 CG42336-RD 457..558 344..445 510 100 Plus
CG42336-RF 901 CG42336-RF 651..752 344..445 510 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11294853..11295172 349..30 1585 99.7 Minus
2R 25286936 2R 11294685..11294786 445..344 510 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:49:47 has no hits.

FMO04232.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:42 Download gff for FMO04232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 179..603 24..450 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:19 Download gff for FMO04232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 179..603 24..450 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:25 Download gff for FMO04232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42336-RC 179..603 24..450 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:25 Download gff for FMO04232.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11294680..11294785 345..450 98 <- Minus
2R 11294858..11295176 24..344 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:42 Download gff for FMO04232.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7182185..7182290 345..450 98 <- Minus
arm_2R 7182363..7182681 24..344 98   Minus