FMO04236.5prime Sequence
398 bp (398 high quality bases) assembled on 2008-07-30
> FMO04236.5prime
GCATACATAATAAAAAGTTATCAGTCGACATGGCCAGCCAGACGCAGGGA
ATCCAGCAGTTGCTCGCTGCCGAGAAAAAGGCAGCCGAGAAGGTCGCCGA
GGCTCGTAAACGCAAGGCAAGGAGGTTGAAGCAAGCCAAGGACGAGGCTA
CCGAGGAGATCGAGAAGTTCCGCCAGGAGCGCGAGCGCGCCTTCAAGGAG
TTCGAGGCCAAGCACATGGGAAGTCGCGAGGGCGTGGCGGCCAAGATCGA
TGCGGATATCCGCGTTAAGCTGGCCGACATGGACCGGGCCATCCAGACCC
GCAAGGACCCGTTCATCCTGGAGATCCTGCAGTACGTGTACAACATCTCG
CCCGAGGTGCACAAAAACTACAACCACAAGGCAAGCTTTCTAGACCAT
FMO04236.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha13-RB | 943 | CG6213-RB | 100..450 | 30..380 | 1740 | 99.7 | Plus |
| Vha13-RA | 703 | CG6213-RA | 100..450 | 30..380 | 1740 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19643511..19643680 | 380..211 | 835 | 99.4 | Minus |
| 3R | 32079331 | 3R | 19643738..19643838 | 212..112 | 505 | 100 | Minus |
| 3R | 32079331 | 3R | 19644201..19644287 | 116..30 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:02:18 has no hits.
FMO04236.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:43 Download gff for
FMO04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha13-RA | 100..455 | 30..385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:12 Download gff for
FMO04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha13-RA | 126..481 | 30..385 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:56 Download gff for
FMO04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha13-RA | 100..455 | 30..385 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:56 Download gff for
FMO04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19643506..19643678 | 213..385 | 98 | <- | Minus |
| 3R | 19643738..19643838 | 112..212 | 100 | <- | Minus |
| 3R | 19644206..19644287 | 30..111 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:43 Download gff for
FMO04236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15469228..15469400 | 213..385 | 98 | <- | Minus |
| arm_3R | 15469460..15469560 | 112..212 | 100 | <- | Minus |
| arm_3R | 15469928..15470009 | 30..111 | 100 | | Minus |
