FMO04238.5prime Sequence
1218 bp (1033 high quality bases) assembled on 2008-07-30
> FMO04238.5prime
CGTATAGCATAATAAAACGAAGTTATCAGTCGACATGTCTGGCGATCGAC
TGGATGTGATTATCTTTGGGGCCAGTGGCTTCACCGGCAAGTACACGGTC
TTCGAGGCGGTCACGGTGCTGCGCGGCTTGCGATGGGGCATCGCTGGCAG
GAACCGCGAGAAGCTGCAGGCGGTGTTGAAGGAGATGGGCGCCAAGGCCA
AGAAGGACCTCTCGCAGGTGCCCATCTTCATCGCGGACGTCAACGACCAG
GCCTCCCTGCTTGAGATGGCGAAAAAGTGCCGGATTGTGGTGAACACGGC
AGGACCCTACCGCTTTCACGGCGAAAACGTCGTGAAGTGCTGCATCGAAT
CGGGCACGCACCATGTGGACGTTAGCGGCGAGCCCCAGTACATGGAGACC
ATGCAGCTGAGGTACGATCAGCTGGCCAGGGAAAAGGGCGTGTACGTGGT
CAGCGCCTGCGGCTTTGACTCCATACCCGCCGACATGGGCGTCGTCTTTG
TGGAAAAAAACTTCGACGGCGTGGTGAACTCCGTGGAGACCTTCCTGGAG
ACCGGAATCAAAGAAGGCGGCAGTGGCGGAGGCACTGCCGGCCTCAACTA
CGGAACCTGGGAGAGCGCCGTTTACGGGCTAGCTCACTCTGACGAGCTGC
GCGGCATCCGGAAGCAGATCTATCCCCAGAGACTGCCAAGATTCTATCCC
TTTCTCAAGCCACGACCGCTGGTCTTCCGCTCTACCGAGGTTGACAAGGT
GTGTCTACCTTTTCCCGGCTCCGACCGCTCGGTGGTAATGAGGTCCCAGC
GCTTTCCTCTACGACCAGGACAAGAAACGTCCGGTCCAGATGCAGGCCTA
CGTGGGATTTTCGTCTTGGCTGGTCGCCGGCGGTGTCATCTTTTTTGCCA
CCATCTTCGGTCTGCTGTCAAAGTTCAAGCTGGGACGTACGCTGCTGCTC
AATTACCCCGGTCTCTTCTCCGGCGGATTGACTCTCGTCGGCCCAAGTGA
GGAGTCAATGGAGCGCACTATTTCAGATGACTTTAAGGCAGTGGCTGGCT
AGAGCGATCGCCTGACCGAGAGTTCAACAATACACGGAGTCCCGACAAGA
CGCCTGATGATCCGCGTATCGGGCATGATCCGAATTGGAAACCACTGCTG
CTTGTTCTCACGGGACTTGACATTCTCTCCGGAAAATCCGGAACAAGAGA
TGTGCCAGACACTAAGGC
FMO04238.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2604-RB | 1636 | CG2604-RB | 133..1241 | 31..1128 | 5120 | 98.1 | Plus |
| CG2604-RC | 1631 | CG2604-RC | 128..1236 | 31..1128 | 5120 | 98.1 | Plus |
| CG2604-RA | 1581 | CG2604-RA | 170..1278 | 31..1128 | 5120 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5222027..5223135 | 1128..31 | 4830 | 97.7 | Minus |
| 3R | 32079331 | 3R | 12406738..12407232 | 49..543 | 855 | 78.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:58:27 has no hits.
FMO04238.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:26 Download gff for
FMO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2604-RA | 164..1292 | 23..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:29 Download gff for
FMO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2604-RB | 132..1260 | 23..1139 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:26 Download gff for
FMO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2604-RA | 164..1292 | 23..1139 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:26 Download gff for
FMO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5222023..5223141 | 23..1131 | 97 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:26 Download gff for
FMO04238.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1047745..1048863 | 23..1131 | 97 | -> | Minus |
