FMO04239.5prime Sequence
1231 bp (822 high quality bases) assembled on 2008-07-30
> FMO04239.5prime
CTTCGTATAGCATACATAAAACAAAGTTATCAATCCACATGGCTTTGCGC
GGTTCCCACCGCTTGGAAGTGATCTTCAAACGCTGCATTGCCTCCCCGGT
GTTACACAGTCATGCAGCCAATCGGAGGAGCATTCAACTAGCGATCAAAG
AAGGCGATCCAAACAGCAATGGTAACAGTGGGCAATATCACCAAAATGGT
GAACAAAAAGAAAAAGGCTGGAGACGATTGGTTCGATTCTTTGTGCCCTT
CTCCCTGGGCGCTGTGGTCAGTGCGGCGATCATCCAGCGGGAAGACTTAA
CGCCAACGATCGCCGCTTCCAAAATGACCGGTCGTCGGCGGGACTTCAAC
TTTATAGCTGATGTGGTGGCAGGTTGTGCGGATTCGGTGGTCTACATTGA
GATTAAGGACACCCGCCACTTTGACTACTTCAGCGGCCAACCGATTACGG
CATCGAATGGTTCCGGCTTCATTATTGAGCAGAACGGTCTCATCCTTACC
AACGCCCATGTGGTGATCAACAAACCACACACAATGGTACAGGTGAGGCT
ATCCAATGGCAGGACTTTTCCCGCCACCATCGAGGACGTGGATCAGACAT
CCGATCTGGCGACTTTGCGCATACAGGTGAACAATCTTTCGGTGATGCGG
CTAGGCAAGAGCAGTACCCTGCGATCCGGCGAGTGGGTTGTGGCCTTAGG
CAGTCCGCTGGCCCTAAGCAATACGGTGACAGCAAGCGTAATCAGTTCAA
CGCAGCGTGCATCTCAAGAACTTGGCCTTCGAAACATGGATATCAACTAC
CTGCAAACGGATGCTGCGATTACATTTGGCAACTCCGGCGGTCCCTTGGT
CAATCTGGATGGCGAGGCTATTGGAGTTAACTCGATGAAGTGACGGCTGG
CATTAGCTTCGCAATACCCATTGACTATGTAAGGTGTTTCTGGAGCGGGC
GACCGAAAAACGAAGATGGCTCGGCCTACAGACTGGCTATCCAGTGAAGC
AGTACATGAGCATCACCATGCTGACGCTCACACCGATATCCTGTCGAGCT
CAAGTTCTCGAAGCCAAGCATGCCCAACACTTAACGCACGGCTTGCTACG
GTGAAGATATCGATGGTTCACCGGCGCTCATGCTGAACTCCCACTCGGAA
GAACTAGTGACCCATACCAATGAAATCCAACTTCTCGCAGTCCTATCGAG
GCCGTCGCGAAATATTATGAACACACCTCCT
FMO04239.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HtrA2-RB | 2512 | CG8464-RB | 306..1442 | 38..1164 | 4880 | 96.1 | Plus |
| HtrA2-RA | 1415 | CG8464-RA | 54..1190 | 38..1164 | 4880 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14510817..14511407 | 628..38 | 2895 | 99.3 | Minus |
| 3R | 32079331 | 3R | 14510272..14510755 | 1097..622 | 1735 | 94.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:10 has no hits.
FMO04239.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:48 Download gff for
FMO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HtrA2-RA | 47..1131 | 29..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:29:07 Download gff for
FMO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HtrA2-RA | 279..1363 | 29..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:15 Download gff for
FMO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HtrA2-RA | 47..1131 | 29..1106 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:15 Download gff for
FMO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14510262..14510750 | 627..1106 | 94 | <- | Minus |
| 3R | 14510819..14511414 | 26..626 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:48 Download gff for
FMO04239.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10335984..10336472 | 627..1106 | 94 | <- | Minus |
| arm_3R | 10336541..10337136 | 26..626 | 98 | -> | Minus |
