FMO04240.5prime Sequence
1015 bp (1015 high quality bases) assembled on 2008-07-30
> FMO04240.5prime
TTCGTATAGCATACATAAAACAAAGTTATCAGTCGACATGCTGCCCGCCA
TCATTTTCCGGCAGGTGCAGCGCCCACTGCACCATGGAGCCGCCACATTG
GAGCACGTTTTGGGAGTCGGCGGAAGCAGCTTCGTGAACTGCCTGAATCG
CTATGCGGCCGCCACGGGATTCATTCGGATCTCGTTTCTGGACATTAAGC
GGCGCAGGAACTACGAGTTAGCCAGACTTCGCCTCTATGCCGATGAGAAG
AAGCAGTCGCTCCATTTGCGCACCTTGCAGGGACGCCATCTCCTGCAGGG
TGTCATCGAAAGGAAGAACTTCCTGGTGGATGACATCCGGGAGGCCAGGC
ACAAAGTCCAGGAGCGGGTGCGCGAGAAGATCGACGAGATACGCGAAGAG
CGAGAGAACATTATGACCATACCCAACATGCTGACCATCAGTCGTGCCGT
CCTCTCACCCTACATCGGATATGTTATAGTCCAGGGCGATTTCACCCTGG
GCATGAGCCTTCTAGCGTTCGCCGGCATCACAGATCTGTTGGATGGACAG
ATCGCACGACGGTGGCCTTCGCAGGCGAGCAAGTTCGGTTCCTTCCTGGA
CCCCATGGCTGATAAGTTGCTGATGGGCTCGCTGGTCATCTCGCTGTGCT
ACACGGACCTGCTGCCCATGTGGCTCATGGGCATCGTGGTGTTCCGGGAT
GTCTTTCTTCTAGGAGCTGGATTTGTTATACGCTACATAAGTCTGCCACC
GCCGAAAACCTTTTCGCGCTACTTCGACGCCACCCATGTTACTGCCCAAC
TGGAGCCCACGCTGCTCAGCAAGATCAACACGGGCGTCCAGTTGGCCACC
ATTGGACTGAGCCTGGGAGCTCCCATTTGGAACTATTTGGATCACCCAGC
TTTGCAGGACTTTGGTATCTGACTGGCCTGACTACGGCTGCCACTGCCCT
CAGCTACGTCATGAATCGGCATAATACTTTAGATATCAAAAAAAAGACGG
CAGCTTTCTAGACAT
FMO04240.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CLS-RD | 1289 | CG4774-RD | 172..1137 | 38..999 | 4715 | 99.5 | Plus |
| CLS-RC | 1373 | CG4774-RC | 256..1221 | 38..999 | 4715 | 99.5 | Plus |
| CLS-RA | 1337 | CG4774-RA | 220..1185 | 38..999 | 4715 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25686315..25686815 | 538..38 | 2505 | 100 | Minus |
| 3R | 32079331 | 3R | 25685768..25685984 | 754..538 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 25685567..25685703 | 890..754 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 25685413..25685501 | 977..890 | 395 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:25:47 has no hits.
FMO04240.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:05 Download gff for
FMO04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CLS-RA | 220..1185 | 38..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:46 Download gff for
FMO04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4774-RC | 239..1204 | 38..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:37 Download gff for
FMO04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CLS-RA | 220..1185 | 38..999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:37 Download gff for
FMO04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25685388..25685500 | 891..999 | 95 | <- | Minus |
| 3R | 25685567..25685702 | 755..890 | 100 | <- | Minus |
| 3R | 25685768..25685983 | 539..754 | 100 | <- | Minus |
| 3R | 25686315..25686826 | 22..538 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:05 Download gff for
FMO04240.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21511110..21511222 | 891..999 | 95 | <- | Minus |
| arm_3R | 21511289..21511424 | 755..890 | 100 | <- | Minus |
| arm_3R | 21511490..21511705 | 539..754 | 100 | <- | Minus |
| arm_3R | 21512037..21512548 | 22..538 | 98 | <- | Minus |
