FMO04241.5prime Sequence
1223 bp (1060 high quality bases) assembled on 2008-07-30
> FMO04241.5prime
TTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGAATCTCTCAA
GTATTAGCCGGAAGGACTTGACGTGTTTCGGAGTGACCACATGTGTCGTT
ATGGTGTGCTTCGTTCTGGTCTCAATCTTCTCCGGATTCATGCACGAGCC
CCAGAGATTCAAGACGATGTTGGTAACCATCGTCCTGGTCTTCTTTTTCC
AATATCTTATCCTGGAGCCCATTCGTTTCTTCATTCAGAGCATCGATTAT
GCCACCTGGCCGCAGGAGGATCCGCCCTATAGAGCGGAGGAGGGAGGGCC
CACTATGGACCACATTGGCTACTTGAAGATCCGGCTACGCAGTCTGCGCT
CCGAGCTCCTGATCTCCGAGGGCCACACGAACGAGATGCTAAACCAGAAA
TACAAGCATATTGCCGGGGACCTGTTGCTCTATGGTTCCTACTTTATTGC
CCTGATGCTGATGGTGGTGTTGCAGGAGGATCATACTAATTACTACAATA
CCAACAACATGCAGCGCCTCTTCTGGGACAATACCTCGGTCACCTTCGGC
CTGTCGCAGGTGTACTTTATATACCAGGTACACAGCTATATGAAGATCAC
CCTAGTCGAGGCCTTCTACGCGCAGAAAACCAACGGCTACGAGGGCTGGT
GGGCCATGGAACAGTGGCAGAAGATCGGTGTGGTTCGCCTGCGCCAAATG
CGCCCAGTGGACTGCCATATTGGACTGGGCAAGCCAGAGTGGGACAAGAA
AACGTATGCGCCCGAGTGGCGTCTTCCTTATCACCGGATGCATTATACGG
AGAAGTTCTGGCGTATCTACGACCCCTTTGTACCGGCCGAGTTCGAGCCC
AGTTTTCTGAATGGCCTGCTACTCAACTACGATCATTATGGCTATTTGCT
CAACTACCCGGAAGTGGCCGGCTACGTAGTGCTCATGATGAGCACAAGAT
AACTGCTTGAAGCAGATCGAATACCTGAGAGACTACAGCTGGCTGGATAA
AAATACTTCGGCTTTGTTTATCGACTGACGATGTACAACGCGATGCAACT
TTCACGTGATCACTCTGCTGTGGAGAACAGCCCATTCGGGATCAGTGCCC
GTGTGCATGTGGAATTCTGGTGTCATGCCTCAAAGTGGAGAAGCAGAAGA
CACTTGAACTCCATATACGGTCCGGTCAACAGCTGATCATCTTGTGCACC
GCCGGGTGTTTCTCGAGAGAAAA
FMO04241.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brv2-RA | 2367 | CG16793-RA | 28..1125 | 38..1125 | 5040 | 98 | Plus |
| brv2-RB | 2301 | CG16793-RB | 162..1059 | 238..1125 | 4055 | 97.7 | Plus |
| brv2-RB | 2301 | CG16793-RB | 28..162 | 38..172 | 660 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17344129..17344669 | 578..38 | 2630 | 99.1 | Minus |
| 3L | 28110227 | 3L | 17343619..17343990 | 947..576 | 1815 | 99.2 | Minus |
| 3L | 28110227 | 3L | 17343407..17343556 | 1093..951 | 440 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:07:45 has no hits.
FMO04241.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:15 Download gff for
FMO04241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brv2-RA | 20..1129 | 30..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:19 Download gff for
FMO04241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16793-RA | 20..1129 | 30..1128 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:13 Download gff for
FMO04241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brv2-RA | 20..1129 | 30..1128 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:13 Download gff for
FMO04241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17343370..17343559 | 949..1128 | 92 | <- | Minus |
| 3L | 17343617..17343988 | 578..948 | 98 | <- | Minus |
| 3L | 17344130..17344682 | 23..577 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:15 Download gff for
FMO04241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17336470..17336659 | 949..1128 | 92 | <- | Minus |
| arm_3L | 17336717..17337088 | 578..948 | 98 | <- | Minus |
| arm_3L | 17337230..17337782 | 23..577 | 97 | <- | Minus |
