FMO04242.5prime Sequence
902 bp (902 high quality bases) assembled on 2008-07-30
> FMO04242.5prime
CGTATAGCATACATAAAACGAAGTTATCAGTCGACATGGAAACTGTGCGA
AATCGAAACCCTCCGCGGATGAAGTACACCGCTCCACCGAAGATGGAATC
GGATTTAAACTTCACCGAGAAGGAGAAGAAAACTCTTACCGAACTGAAGC
AGCTCTATTTGGAGACCATTAACCTGGATGTGGCTCTGCAGCGCGACATT
TACAATATCGAGAAGAAGTACGAGGATAAGCACAATATCATATTTGATAA
GCGCAAGAAGATTCTAGATGAGTTTAGAAAGCAAAACCACGGTGACGTGG
AAACCAATCAGAGCGTGCCCAACTTTTGGCTGAGGGTTCTCAAAGCATCG
TACACCGAGTTCATCAGCAAGAGGGATGAGAAAATATTAGAGTGCTTAAG
CGACATCCGTTCTCGGCTGTACAACGAACCCGTGGTGAAGTTTGATATCG
AATTCCACTTCGATCCCAATGATTTCTTTACCAACACGGTGCTGACCAAG
ACATATTTCCTCAACTGCCTGCCGGATCCAGACGATCCGCTCGCATATGA
TGGCGCCGAGATCTACAAGTGCGAAGGCTGCGTCATCGACTGGAAGCAGA
CCAAGGACCAGACCAAAACCGAAAATCAAGAGCCGTCGTTCTTTGAGTTC
TTCTCGCCGCCGCTTTTGCCAGAAGATACCCTTGACCCCAACTACTGTGA
CGTCAATGCTATGCTGCAAAACGATTTTGAGGTGGGCTTCTATCTAAAGG
AGCGCGTGATTCCCAAGGCGGTGATCTTCTTCACCGGCGAGATTGCCGAT
TGTCAGAGCTCCAGCGGATCGGAGACCGAGTCGGAAGATACCGAGGACGA
GTCGGATGCCGAAGAGGAGGATGGCGTCGACAAGGCAAGCTTTCTAGACC
AT
FMO04242.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mil-RA | 1097 | CG5017-RA | 122..970 | 36..884 | 4215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27912568..27912800 | 36..268 | 1165 | 100 | Plus |
| 3R | 32079331 | 3R | 27913052..27913282 | 391..621 | 1140 | 99.6 | Plus |
| 3R | 32079331 | 3R | 27913482..27913658 | 708..884 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 27912866..27912989 | 269..392 | 605 | 99.2 | Plus |
| 3R | 32079331 | 3R | 27913341..27913428 | 621..708 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:59 has no hits.
FMO04242.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:57 Download gff for
FMO04242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hanabi-RA | 117..978 | 28..893 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:47 Download gff for
FMO04242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5017-RA | 117..978 | 28..893 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:45 Download gff for
FMO04242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mil-RA | 117..978 | 28..893 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:45 Download gff for
FMO04242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27912563..27912800 | 28..268 | 98 | -> | Plus |
| 3R | 27912866..27912989 | 269..392 | 99 | -> | Plus |
| 3R | 27913054..27913282 | 393..621 | 99 | -> | Plus |
| 3R | 27913342..27913427 | 622..707 | 100 | -> | Plus |
| 3R | 27913482..27913666 | 708..893 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:57 Download gff for
FMO04242.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23738776..23739004 | 393..621 | 99 | -> | Plus |
| arm_3R | 23739064..23739149 | 622..707 | 100 | -> | Plus |
| arm_3R | 23739204..23739388 | 708..893 | 97 | | Plus |
| arm_3R | 23738285..23738522 | 28..268 | 98 | -> | Plus |
| arm_3R | 23738588..23738711 | 269..392 | 99 | -> | Plus |
