FMO04243.5prime Sequence
1209 bp (1035 high quality bases) assembled on 2008-07-30
> FMO04243.5prime
ACTTCGTATAGCATAATAAAACAAAGTTATCAGTCGACATGACCAGTTTC
CGCAAGCGCACCGTGCAGAAGCCAATCCGCGGCACCCGCACCTCGCCGCA
CACGGCGCAGGTGATCACCTCCAGCGGAAATCCGTACTTGGACGTGGTCA
TTGGCGGCGGTCTGCCCATGGGTTCGATCTGCCTGATCGAGGAGGATCGC
TTCATGACGCACGCCAAGGTGCTGGCCAAGTACTTTCTGGCCGAGGGTGT
GATTTCCAAGCAGGAGATATTTCTGGGCAGCCTGGACGACATTCCAGCCG
AGATGCTGCGCCGTCTGCCCAGACCGCTGACCGACCAGGAATCGATGGAG
CAAAGCGAGGTGCAAGCGCTGGGAGATGCTGGCGCCGAAAATGGCCTAAG
GATCGCCTGGCGATACAATGATCTGCCGCTGGTGAATTCGGAACATGCCA
CAGCAAAAATCGGACACCATTTCAATCTGATGGAACAGATGGACTCCATG
ATGCTCTACAATGTCAAGACTACCTTGTGGGACGATAGCCCCAAGCATCT
GGACATCGTCATTGACGAGGAGTTCTCCAAGAGCAGCTCCCCAACCACTC
CGTCGCTGGAGCAGCAGCCCGTGGAGGATGCCCCACCGATTCCGGGCACG
GAGACCGCTCCGCAGGAGAAGATGCCAGCCCAGGAGGAGGAGAACTCTGC
CAACAACAATAATAACAACAATAACAATAGCAGCAGCGTGACCAGTAGCA
CAAAAACAGGCAGCCAGGATTCGCCGTTGCAGGTGTTCCACAACCCTCGG
TACAAAGGACTGCTCAACGATATTCAACAGCTGCTGCGTAACGAGAGCTT
CGTCGCTGGGACCAAGAATAACCTGTGCCGCGTCTGCCTGACCTCGTTGG
GATCGCCGCTGTGGTACGACGAACACTTCGGCGAGGATCTGATCAAGTTT
CTCACACTGCTGATGGCCAGTGTGCGGAACTGCAACTCCGTGTGCCTGAT
CACGATGCCCATGCCCCTGATTGCCAAGTACGATGCAGCTATGCCAGATC
GCCACTGGGTGACTATGCAATCGACTGGAGTCGTTGCCGGTTCGGAGCGT
GAAACGCACCCAGCTTCAGAATACAGTGGCTGTCATTGCACAGAGTCCGC
CATCAATCCTGGCCGTCATTGCCGAATCGGACTGGCCCTTCAGATTGCGC
GCCAAGGAA
FMO04243.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6907-RB | 1512 | CG6907-RB | 113..1260 | 39..1166 | 5155 | 97.6 | Plus |
| CG6907-RA | 1671 | CG6907-RA | 272..1419 | 39..1166 | 5155 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5524410..5525407 | 39..1036 | 4960 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-28 22:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5648..5713 | 700..764 | 129 | 68.2 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 19..46 | 702..729 | 113 | 89.3 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 22..49 | 702..729 | 113 | 89.3 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7057..7084 | 702..729 | 113 | 89.3 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7060..7087 | 702..729 | 113 | 89.3 | Plus |
FMO04243.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:11 Download gff for
FMO04243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6907-RA | 272..1375 | 39..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:33 Download gff for
FMO04243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6907-RA | 272..1375 | 39..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:16 Download gff for
FMO04243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6907-RA | 272..1375 | 39..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:16 Download gff for
FMO04243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5524406..5525513 | 36..1130 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:11 Download gff for
FMO04243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5524406..5525513 | 36..1130 | 98 | | Plus |
