FMO04244.5prime Sequence
1202 bp (1039 high quality bases) assembled on 2008-07-30
> FMO04244.5prime
TATAGCATACATAAAACGAAGTTATCAGTCGACATGATTGTTACCTCCGC
TTCTGGACTGGATAGCACTCCGACGCTCGGCACCATCGAGGTGACCACTT
TGCTGGGCGCCTTTTTCGGCGTCCTCGTTCTACTGCTCCTGTTGTTTCTT
TTCATCAGTCGCAAGTGCTGTTTTCACTACCGCCATGCCATCAACTGCTG
CGACGAGCGCCACCTTGCAGTCAAGTGTGTGCAGAAGATCACCCGCAAAA
GGCGTTACGAGAACACCAGCTCCGACTCGGAGGAAGACATCTTGAGGCGC
CTGCGGTGGCATCAACAGCACCAACTGGGCGAGAAGCCTGGCGGATACGG
GCTGGGAATCAGCCAGGCTAATCCGCTGACGGCGCAGAGCTTCAACTACC
ACCAAGCAGGCGCAAGTGCCGACCTGCAGCGTGTGACGGTGTCGCGTGAC
CCCTTAGCCATCGCCGAGCGTGGCAAGGTTGGAATCCCGTCATCGCACAG
TGAGTGCAGCTCGAACGATTCCATGGAGGTCTCCGTGGACAGTCACACAG
GCGTCCTGACGGGTCTGAGCAAAGCCACAACCACAGTTCCCCACCCGGCG
ACAGCCTTCCGCAATCCGTGTGGAGAACACCGGGCCAAGACCCAGGCACT
GAGGTACCAGCACCGGGTCAACGTGGCTGCTCCGCCAAAGCTGGACAAGG
AACGGGACAACGTGCTGGTGGTGCCCATGGTCAATGCCTACAGCATTAAC
AACAACAACAACTCGATAACAACCAGCAATAACCATCCCAGCAGCAACAA
CAACGATGACGAACCCCTATTTGACACCAGCGATTTGCGCTCGATCAAGT
CGGATGACCTACTGGTTGGTGTGGACCAGAAGGAGCCGGCCGTGCAGAGG
GGTCCCATCGAGCTGGAGCTGTCGCTGCTGTACGACGCCCCAATGCGGAA
ATGACGTGCACGTGATGCAAGCAAAAAATCTTCGCCCCTGGTAGTGGGCA
GACCACCCACACGCAGTCCGATGCTGATGCTGCAGCAAAAGCAGAGCCTC
AAACAGATCGTAGCGGCGAAATCCACAGTAATTGGAAAGCTTCTCTCCAT
CGCGTCAACCAAAAATGTGACAACTGCCCTGCATTGCGCTACGGTGCAAC
GCGTAGCCAGGACCGCTGAATGGGCAGCGTATGGTAGAACCTCGTCCACC
AT
FMO04244.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syt14-RD | 2736 | CG9778-RD | 443..1535 | 34..1110 | 4995 | 98 | Plus |
| Syt14-RC | 3871 | CG9778-RC | 443..1535 | 34..1110 | 4995 | 98 | Plus |
| Syt14-RA | 2736 | CG9778-RA | 443..1535 | 34..1110 | 4995 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4317956..4318288 | 574..242 | 1665 | 100 | Minus |
| 3R | 32079331 | 3R | 4317653..4317891 | 811..573 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 4316897..4317106 | 1016..811 | 835 | 97.6 | Minus |
| 3R | 32079331 | 3R | 4318348..4318510 | 241..79 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 4318581..4318627 | 80..34 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:54:04 has no hits.
FMO04244.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:05 Download gff for
FMO04244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt14-RA | 433..1552 | 24..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:49 Download gff for
FMO04244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9778-RA | 433..1552 | 24..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:33 Download gff for
FMO04244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syt14-RA | 433..1552 | 24..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:33 Download gff for
FMO04244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4316774..4317106 | 811..1124 | 92 | <- | Minus |
| 3R | 4317654..4317889 | 575..810 | 100 | <- | Minus |
| 3R | 4317956..4318288 | 242..574 | 100 | <- | Minus |
| 3R | 4318348..4318509 | 80..241 | 100 | <- | Minus |
| 3R | 4318582..4318632 | 30..79 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:05 Download gff for
FMO04244.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 142496..142828 | 811..1124 | 92 | <- | Minus |
| arm_3R | 143376..143611 | 575..810 | 100 | <- | Minus |
| arm_3R | 143678..144010 | 242..574 | 100 | <- | Minus |
| arm_3R | 144070..144231 | 80..241 | 100 | <- | Minus |
| arm_3R | 144304..144354 | 30..79 | 94 | <- | Minus |
