FMO04245.5prime Sequence
651 bp (651 high quality bases) assembled on 2008-07-30
> FMO04245.5prime
TTCGTATAGCATAATTAAACAAAGTTATCAGTCGACATGTCGTCTCCGTG
TGGCAAGTGCAACAACTGTCCCTGCGGCACCAGCGGCGGAGCCCCACCCC
CCCAGCAGCCGCCCCACAGGCCACCCCCCTCGTACGCCCACCAGCCGCAG
CAGCAGCCGGACAGCTGTCCCTATCCGGGTCCGCGGGGCCAGGGAGCAGG
CGGGTGCCAGGTCAACTCGACGCAGCCGCCGGGCGATCCCGCCGCATGCA
GCCTCTACCAGAGCCGGGGAGCCCCCACCGTGGAGTGCACGTGCACTCAG
AACCGTAGCCGGCCACCTCCGCCATCCGTTCAGGCGGACCACATCACGTG
CAGCCGGGGTCCGCGGGAGCAGCCGCCTGCCCTGGAGACCCGCTGCACCT
GTCGCGAGAAGCCCGCCAAGACGGAGTGCCACTGCGCCCCGCCGGTGGCC
CCGCCTCCCAACCAACAGCAGCAGCAGGCGATGGCCCAGCCCACCTACGC
CAACGTGACCTGTGGCCAGAACGTGCCCAGAGGACCGCAACCCTATCGCC
CGCACCACGGCAACCAGAGTCAGAACCCGAACTCCTGCGGCCACTGTCGA
TCGCAGAAGAAGCAGAAGAAGTGCGTCATTCAGGCAAGCTTTCTAGACCA
T
FMO04245.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34277-RD | 1803 | CG34277-RD | 53..649 | 37..633 | 2985 | 100 | Plus |
| CG31542-RC | 1803 | CG31542-RC | 53..649 | 37..633 | 2985 | 100 | Plus |
| CG31542-RA | 832 | CG31542-RA | 53..649 | 37..633 | 2985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5369655..5370247 | 41..633 | 2965 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1194..1276 | 639..560 | 110 | 62.7 | Minus |
FMO04245.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:26 Download gff for
FMO04245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34277-RD | 53..655 | 37..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:35 Download gff for
FMO04245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31542-RA | 53..655 | 37..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:33 Download gff for
FMO04245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31542-RA | 53..655 | 37..640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:33 Download gff for
FMO04245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5369649..5370253 | 33..640 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:26 Download gff for
FMO04245.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1195371..1195975 | 33..640 | 98 | | Plus |
