Clone FMO04246 Report

Search the DGRC for FMO04246

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:42
Well:46
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG1134-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04246.5prime Sequence

1069 bp (979 high quality bases) assembled on 2008-07-30

> FMO04246.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGAATTTTTACA
CGAATCCGTTGCACTGGGCGTGGATCTGCTAATACTTGGCCTGTGTGCGC
GCGAGTACGTGCACTACAAGCGAACTGCCAAGGTGCTGAAGGCGGCACCA
CAATACAACATCGATGGAGACCTAAAATCGGTGGTGGAGCGGCAGCGCGA
CAAGAAGATACCGTATGCGGTAATCCGGGGCACAGTGACGCCCATCGGGG
TGCCACTGAGGAGCTCCCTGGTGCCCAGTGTGAGTGGAGTGCTGCAGATT
GTGAAGCTGCATGAGCACAGGGTAACGCGCGGATTCGCCGGCTTCTGGAC
GGAACAACACAAGTTGCTGCACGAATCCGCCAACGAGATGCCCTTCGAGT
TGCGTAACCAGAGCCATGGTGTGGAGATTGTGGACGCCTTGAGTGCCGCC
GTCTTGGACGTGGACGTGGTCTACGACAACTACGAGCCCTCCAATCTGTC
CCTCTTCGACCATGTGTTTGGTTTCTTCTCTGGCGTCCGTCAGAGGGGAT
TGCAAACGACGGAGGAGGTGCTCAGAGAAGGCAGCTTCCTGACCGCTATT
GGTGAACTGGAGTTGGATGGCGATACTCTGCGCATGCAGCCCTCCAATGA
GGGACCGCTCTTCCTGACCACTGCCACCAAGTCCACGCTTATTAAGCGGT
TCGAAGATGCCAAGACAACGACGATACTCAAGCTGGTTGTGTGCAGCACC
ATCTCTGCCATCCTGGTTGCCTTCATTGCCAAGAAACTCTACCGAAAACG
AAAGCAGGAGCGGGAGGAGGCCAAAATTCGCGAACGCCTGGATACGGAGC
GTCGGGAGCGGAGGGCGAGGAGTCGTCCTCACACTCTGTCCCAGGATCAA
CTCTGCGTGGTGTGCTCCACTATCCCAAGGAGATTATCCTACTGCCATGT
GGTCATGTGTGTCTCTGCGAGGACTGTGCCCAGAAATCTCGTCACCTGCA
CGTGTGTCGTGTTAGCATCGTCTTCAATGCAGTCGCCTTCATCGTCGCAA
GCTTTTCTTGTACTATTCA

FMO04246.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
Mul1-RB 1656 CG1134-RB 79..1090 37..1044 4855 98.9 Plus
Mul1-RA 1213 CG1134-RA 79..1090 37..1044 4855 98.9 Plus
CG11594-RA 2895 CG11594-RA 2660..2776 1044..931 435 93.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4021702..4022287 140..725 2915 99.8 Plus
3L 28110227 3L 4022346..4022540 726..920 975 100 Plus
3L 28110227 3L 4021535..4021640 37..142 530 100 Plus
3L 28110227 3L 4022819..4022935 931..1044 360 93.2 Plus
Blast to na_te.dros performed on 2014-11-28 19:11:56 has no hits.

FMO04246.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:54 Download gff for FMO04246.5prime
Subject Subject Range Query Range Percent Splice Strand
Mul1-RA 73..1095 29..1051 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:44 Download gff for FMO04246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1134-RA 91..1113 29..1051 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:43 Download gff for FMO04246.5prime
Subject Subject Range Query Range Percent Splice Strand
Mul1-RA 73..1095 29..1051 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:43 Download gff for FMO04246.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4021535..4021639 37..141 100 -> Plus
3L 4021704..4022287 142..725 99 -> Plus
3L 4022346..4022553 726..932 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:54 Download gff for FMO04246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4021535..4021639 37..141 100 -> Plus
arm_3L 4021704..4022287 142..725 99 -> Plus
arm_3L 4022346..4022553 726..932 99 -> Plus