FMO04246.5prime Sequence
1069 bp (979 high quality bases) assembled on 2008-07-30
> FMO04246.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGAATTTTTACA
CGAATCCGTTGCACTGGGCGTGGATCTGCTAATACTTGGCCTGTGTGCGC
GCGAGTACGTGCACTACAAGCGAACTGCCAAGGTGCTGAAGGCGGCACCA
CAATACAACATCGATGGAGACCTAAAATCGGTGGTGGAGCGGCAGCGCGA
CAAGAAGATACCGTATGCGGTAATCCGGGGCACAGTGACGCCCATCGGGG
TGCCACTGAGGAGCTCCCTGGTGCCCAGTGTGAGTGGAGTGCTGCAGATT
GTGAAGCTGCATGAGCACAGGGTAACGCGCGGATTCGCCGGCTTCTGGAC
GGAACAACACAAGTTGCTGCACGAATCCGCCAACGAGATGCCCTTCGAGT
TGCGTAACCAGAGCCATGGTGTGGAGATTGTGGACGCCTTGAGTGCCGCC
GTCTTGGACGTGGACGTGGTCTACGACAACTACGAGCCCTCCAATCTGTC
CCTCTTCGACCATGTGTTTGGTTTCTTCTCTGGCGTCCGTCAGAGGGGAT
TGCAAACGACGGAGGAGGTGCTCAGAGAAGGCAGCTTCCTGACCGCTATT
GGTGAACTGGAGTTGGATGGCGATACTCTGCGCATGCAGCCCTCCAATGA
GGGACCGCTCTTCCTGACCACTGCCACCAAGTCCACGCTTATTAAGCGGT
TCGAAGATGCCAAGACAACGACGATACTCAAGCTGGTTGTGTGCAGCACC
ATCTCTGCCATCCTGGTTGCCTTCATTGCCAAGAAACTCTACCGAAAACG
AAAGCAGGAGCGGGAGGAGGCCAAAATTCGCGAACGCCTGGATACGGAGC
GTCGGGAGCGGAGGGCGAGGAGTCGTCCTCACACTCTGTCCCAGGATCAA
CTCTGCGTGGTGTGCTCCACTATCCCAAGGAGATTATCCTACTGCCATGT
GGTCATGTGTGTCTCTGCGAGGACTGTGCCCAGAAATCTCGTCACCTGCA
CGTGTGTCGTGTTAGCATCGTCTTCAATGCAGTCGCCTTCATCGTCGCAA
GCTTTTCTTGTACTATTCA
FMO04246.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mul1-RB | 1656 | CG1134-RB | 79..1090 | 37..1044 | 4855 | 98.9 | Plus |
Mul1-RA | 1213 | CG1134-RA | 79..1090 | 37..1044 | 4855 | 98.9 | Plus |
CG11594-RA | 2895 | CG11594-RA | 2660..2776 | 1044..931 | 435 | 93.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:11:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4021702..4022287 | 140..725 | 2915 | 99.8 | Plus |
3L | 28110227 | 3L | 4022346..4022540 | 726..920 | 975 | 100 | Plus |
3L | 28110227 | 3L | 4021535..4021640 | 37..142 | 530 | 100 | Plus |
3L | 28110227 | 3L | 4022819..4022935 | 931..1044 | 360 | 93.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:11:56 has no hits.
FMO04246.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:54 Download gff for
FMO04246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mul1-RA | 73..1095 | 29..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:44 Download gff for
FMO04246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1134-RA | 91..1113 | 29..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:43 Download gff for
FMO04246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mul1-RA | 73..1095 | 29..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:43 Download gff for
FMO04246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4021535..4021639 | 37..141 | 100 | -> | Plus |
3L | 4021704..4022287 | 142..725 | 99 | -> | Plus |
3L | 4022346..4022553 | 726..932 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:54 Download gff for
FMO04246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4021535..4021639 | 37..141 | 100 | -> | Plus |
arm_3L | 4021704..4022287 | 142..725 | 99 | -> | Plus |
arm_3L | 4022346..4022553 | 726..932 | 99 | -> | Plus |