FMO04248.5prime Sequence
1219 bp (1029 high quality bases) assembled on 2008-07-30
> FMO04248.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGAGCGATAATGAGGA
TGGTGAGGAGCGGAAGGCATCGACCTTCGAGTCGATTATAGACAACATGT
TCAGCCGGTTGCGGATCATCGCAGTGGACGTGGAGAAATTACAGAAGGCC
AAGGAGAAGTTAAATATTATGCAACGGCGGAACACCTTCTACCATCTTCT
AGGCCAGGAGGAAGAAGTCAGCATGAACCGTGGAAGCGAGATGGCGATTC
TTCGATCCAAGTATTCCTTACATTCGGGTTTCAATCAGAATTGCAGCTCG
GCCTCGGAGGAGGAACTCGACTTCGAGGAGTTAAGCGAGGATCCGTGCAA
CATATCTTTCGAGGAGGATCGCTGGCACGGTTTCTTCAAAGACTTTCAGA
TCCTGACCACCCCAGTCGGCACCGATCCCAACGAGAACCGCAAGTGTGTG
GAACTGACTTCGATGACGAACTGCGATCTCGAGATCAAACACCATCTATT
GGGCGGAGTCCGCTGCTTTATGGTCAACCTTTTCGAGGGCACTCAGCATG
ACAACCAGAGCCTGATCGTAAAGCTGCGAGAGGCGGAGATCAGTGTTTCA
AAGGAGTTGGGTTTTCCCGTGACGTCTTCAGTGATGGTGAAGATATCGCC
GCGCCACCAGTTCACTGGCGGATTCAGCACTCAGTTCCGCCAGGAGGGCA
AGAAGTGCGTTGAACTTGTGCAGGGCCAGAAGGTAATCCTGACCGTGGAT
CGGCAGTACTCGGATCGGAGCAACGCTGATGTTATATATGTGAATGCCCG
CTTTTTGATCGTTGATGTACACCCCTTGGCTTTATTCTGATTGGCGAGGA
CATTCAACTGATGGTGCGGAGCATCCACGCGGACCACCTCAAGGGCTGTG
TGGCCAGGGAGGCATGCTGTATGCCCACATGCCTGTCTTATTCCCGGCGA
GGTGTCGTCGTTTCCGGATCTCGTACGAGGAGCTAGAGGACCTTACCTTC
GCCCGAGAAGTGGCCTGATGTGTAGTATCCAATATCGTGGGACCCCAAGT
ACGTGGACACTGAGCACGCATGTCCGCTATGCACTTCGATGCAATGAAAA
CTGTACGCCTAGAAGTGGTGTCTCACCGAGTCAGGCTGCCAAGGGAAGCT
GAACGGCATCACGCTACACGTCTTGTGACTGGCGGACCGCTACTGTTTTC
CGGAACAATATGGGTCACC
FMO04248.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-RA | 2110 | CG11249-RA | 53..1183 | 34..1154 | 5070 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21672927..21673529 | 500..1091 | 2450 | 96.8 | Plus |
| 3L | 28110227 | 3L | 21672191..21672656 | 34..499 | 2315 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-28 20:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 5214..5265 | 298..250 | 117 | 75 | Minus |
FMO04248.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:41 Download gff for
FMO04248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 48..1137 | 26..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:17 Download gff for
FMO04248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 48..1137 | 26..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:46 Download gff for
FMO04248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 48..1137 | 26..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:46 Download gff for
FMO04248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21672186..21672656 | 26..499 | 99 | -> | Plus |
| 3L | 21672927..21673531 | 500..1092 | 97 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:41 Download gff for
FMO04248.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21665286..21665756 | 26..499 | 99 | -> | Plus |
| arm_3L | 21666027..21666631 | 500..1092 | 97 | <- | Plus |
