Clone FMO04250 Report

Search the DGRC for FMO04250

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:42
Well:50
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5024-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04250.5prime Sequence

548 bp (548 high quality bases) assembled on 2008-07-30

> FMO04250.5prime
CGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGATGACTTTGAT
TTCAGTAGTCCACCTCCGGAGGTACGAACAGTTCATACCCACACGCTGAA
TGATGAACAGCTCAAGGATTGTGAGGCGGCCTTCGCCCTCTTCGACGACG
ATAATGCCAAGGTCATTCCGATCAAGTTATTGAGAGATTGCCTGCGAGCC
GTGGCCCACAACCCGCCGGAAAACGAGATACAGGATTATATCACCGAAAT
TGATACGGATGGATCCGGCGAGCTTTATCTCAGTGATTTCCTATACATCA
TGTCGAAACGGTACGAGAATTTGACTGTCGAAGATGAAGTTATCCTCGCG
TTCAAAGTCTTCGACAAAGATGGATCTGGCTTTATACACGAGAATGAGTT
CCGTCAGATAATGACTGAATATGGCGATGAAATGGAAGAGGACGAGATCG
AGGAAATGATACGTGATGCCGACGCCAACACGGAACTGAAAATCGACTAC
GTTCGCTTTGTGACCATGATGATGGAGACGGCAAGCTTTCTAGACCAT

FMO04250.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5024-RB 643 CG5024-RB 109..604 35..530 2435 99.4 Plus
CG5024-RA 680 CG5024-RA 109..604 35..530 2435 99.4 Plus
Acam-RB 1224 CG17769-RB 284..426 244..386 205 77.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25811204..25811699 35..530 2435 99.4 Plus
3R 32079331 3R 25812194..25812336 244..386 205 76.2 Plus
Blast to na_te.dros performed on 2014-11-28 19:40:29 has no hits.

FMO04250.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:14 Download gff for FMO04250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5024-RA 109..607 35..534 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:52 Download gff for FMO04250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5024-RA 109..607 35..534 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:29 Download gff for FMO04250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5024-RA 109..607 35..534 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:29 Download gff for FMO04250.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25811204..25811702 35..534 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:14 Download gff for FMO04250.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21636926..21637424 35..534 99   Plus