FMO04259.5prime Sequence
615 bp (615 high quality bases) assembled on 2008-07-30
> FMO04259.5prime
GTATAGCATAATAAAACGAAGTTATCAGTCGACATGTACCGCACCGAGAC
TCTGCTGCTAATCCTGACGAGCGTCGGGATACCGTCACTGGCCTATCTGC
CCGATGTGAACATATTCACCAACTACCGCACCGAGGTCTATAATGGCATT
CCATCGGAGATTGATACCACACCGTTCGTGCGGATCGGGGACAACTATTA
CTACATCGAGCCCATGAATAAGGTGAATTGGTTTCAGGCGGCCGGCGCCT
GTCGCATGATGAACGCCCACTTGGCCTCCATCGAGGATAAGCCGGAAATG
GAGGCGCTGATCAAATACATGAAGGCCAAGGGGTTCAAGAACAATGATTA
CTTTTGGATATCGGGCAATGACCTGGGCACCGAGGGCGCCTTCTATTGGA
TGTCCAACGGCCGCCCGATGACCTACGCCCCTTGGAACGGGCCCAAGCAA
ATGCCGGATAACTACGGCGGCAACGAGAACTGCGTCCACATGTTCGCCAC
CCGGGAGATGATCAACGATGCCAACTGCAAGATCCAGATGCTGTACGTCT
GCGAGGCGACGGAACCGAAAACCTTCAAGTTCACCTACATTAAGTGGGCA
AGCTTTCTAGACCAT
FMO04259.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12111-RB | 675 | CG12111-RB | 27..590 | 34..597 | 2820 | 100 | Plus |
| CG12111-RA | 631 | CG12111-RA | 27..590 | 34..597 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8570293..8570745 | 597..145 | 2265 | 100 | Minus |
| X | 23542271 | X | 8570810..8570922 | 146..34 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:09:34 has no hits.
FMO04259.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:07 Download gff for
FMO04259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12111-RA | 22..598 | 26..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:50 Download gff for
FMO04259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12111-RA | 9..585 | 26..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:34 Download gff for
FMO04259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12111-RA | 22..598 | 26..607 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:34 Download gff for
FMO04259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8570811..8570927 | 25..145 | 95 | -> | Minus |
| X | 8575707..8575723 | 9..24 | 94 | | Minus |
| X | 8570285..8570744 | 146..607 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:07 Download gff for
FMO04259.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8464318..8464777 | 146..607 | 99 | <- | Minus |
| arm_X | 8464844..8464960 | 25..145 | 95 | -> | Minus |
| arm_X | 8469740..8469756 | 9..24 | 94 | | Minus |
