FMO04260.5prime Sequence
725 bp (725 high quality bases) assembled on 2008-07-30
> FMO04260.5prime
ATAGCATACATAAAACGAAGTTATCAGTCGACATGGAAAACCTAGACTCC
ACTGTCGATAGCACCGAGAACAGCAAGTTCTCGGCCCTGTACGGTGGATT
GATTAAGGAGATCGCTGCAACCTCGAAGATGTCCACCTTGGACATCACCT
GTTTGCTTTGCGTTTACTACAAGTTCGTCAGGTTCAACGGACCTGGCGCC
AAACAGATGAAGAAGAATCAGTTCTACCAGATCTACTTGGTGCTCTTCAA
CGTGGCCAATGTTCAGGTGATTGAACGCTCCCTTCTGGCCATCACCAAGG
ATACCAAGTACGTGAGTCCCCGTGCCTGGGTTGATCTCTTTGAGCTGTAC
ACCACAGAGGATCTGGAGCGCCGTATGAAGTTTGCCTTTGAAGTTTATGA
CACCAAGAACACCGGAGTTATCGATCGCGAGCAGGTGGGCGTGGCATGCG
AGAAATTCTTCCACGAAGGCGACGACGAAGATGAACTAATTGAGCTCAGA
GCGGACATGACTGAATTTATTATGAAGAAGTTTGATGTAGACAAGGATGG
AGTCATTTCGTTTGAGGACTACTCCTCGGTTGTTTCACAACAACCCGTTT
TGGTTGAGTTCTTGGGCTGGCTATTTCCATCGAACGAAGAAAGGGATCTT
ATGGCCCATGTTATCAACATGGACTCCATGCTCAATTATTGTAATCCGGA
CGCAAAAGCAAGCTTTCTAGACCAT
FMO04260.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15177-RA | 1013 | CG15177-RA | 131..806 | 32..707 | 3380 | 100 | Plus |
| CG15177-RB | 989 | CG15177-RB | 131..782 | 32..707 | 3010 | 96.4 | Plus |
| sowi-RA | 830 | CG15178-RA | 148..771 | 33..659 | 740 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6628829..6629191 | 394..32 | 1815 | 100 | Minus |
| 3R | 32079331 | 3R | 6628411..6628615 | 707..503 | 1025 | 100 | Minus |
| 3R | 32079331 | 3R | 6628664..6628775 | 504..393 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 6627434..6627753 | 352..33 | 445 | 75.9 | Minus |
| 3R | 32079331 | 3R | 6626989..6627145 | 659..503 | 260 | 77.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:05:34 has no hits.
FMO04260.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:48 Download gff for
FMO04260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15177-RA | 131..813 | 32..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:37 Download gff for
FMO04260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15177-RA | 131..813 | 32..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:23 Download gff for
FMO04260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15177-RA | 131..813 | 32..715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:23 Download gff for
FMO04260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6628404..6628614 | 504..715 | 98 | <- | Minus |
| 3R | 6628665..6628775 | 393..503 | 100 | <- | Minus |
| 3R | 6628831..6629191 | 32..392 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:48 Download gff for
FMO04260.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2454126..2454336 | 504..715 | 98 | <- | Minus |
| arm_3R | 2454387..2454497 | 393..503 | 100 | <- | Minus |
| arm_3R | 2454553..2454913 | 32..392 | 100 | | Minus |
