FMO04262.5prime Sequence
1238 bp (1044 high quality bases) assembled on 2008-07-30
> FMO04262.5prime
GTATAGCATACATAAAACGAAGTTATCAGTCGACATGTATGCGCTTCGAC
ACCTGCGACTCCAGAGCGCTAGGCACTTCCGCAGCTCTTATGCAGCGGCG
GCAACAACAAAACACATGCTGCCCCGGCAACCAGCGCGTGTTCTGATTGG
AGATTGGAGCACTTGGGATAAGTCCCGGCTGCAGGATGTATGCTCCAGGA
GTTCGAGTACCGCCACTGAGCCCGTGAAGCAGCAAACGCCGCTGCAGGAA
CTCGTGTCGGCCGCCAAACCCTATGCCCAACTAATGCGAATCGACCGGCC
TATTGGCACCTACCTCCTTTTCTGGCCTTGCGCCTGGAGCATAGCGCTCA
GCGCGGATGCGGGCTGCTGGCCGGACCTCACCATGCTGGGTCTGTTCGGC
ACCGGGGCACTGATAATGCGCGGCGCCGGGTGCACACGACAACGATCTCT
GGGACAAGGACATCGATGCCAAAGTGGAGCGCACGAGGTTGCGGCCCTTG
GCCTCGGGTCAGATCAGTCAGTTCGATGCCATAGTATTCCTCTCGGCGCA
GCTCAGTCTGGGTCTTTTGGTGCTGGTCCAGCTCAACTGGCAATCCATAT
TGTTGGGCGCCAGTTCGCTGGGCCTCGTGATCACGTATCCGCTGATGAAA
AGAGTCACCTACTGGCCCCAGCTGGTTCTGGGCATGGCCTTCAATTGGGG
CGCCCTACTGGGCTGGTGTGCCACCCAGGGCAGTGTCAACCTTGCCGCCT
GCTTGCCACTCTACCTCTCCGGCGTCTGTTGGACCATTGTCTACGACACG
ATATACGCCCACCAGGACAAGCTGGATGACCTGCAGATCGGTGTGAAGTC
CACGGCACTTCGATTTGGGGAGAACACCAAGGTCTGGCTGTCGGGATTCA
CGGCAGCAATGCTGACGGGTCTTTCTGCCGCCGGCTGGGCTTGCGATCAA
ACGTGCCGTACTACGCGGCTGTGGAGTAGTGGGTGCCCATCTGGTGCAGC
AGATCTATTCCCTCAACATTGACACCCAGCGACTGCGCCAAAGTTCATAT
CGGACCACCAAGTAGACTCATTCTCTTCCTCGGCATTGTTCTTGGCACCC
TTCTGAAATCGACGAAAGGCAGGAAACAGCGACAATCCTCACTACAACAT
CGACGTCCAGCTCTGTACGTTCAGCGTGCGCGAGCCTGAAGTTTAAGCGC
AAGCTTTAAGAACCACATTCTGTTTGTCGCCCCCGCGA
FMO04262.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Coq2-RA | 1643 | CG9613-RA | 95..1238 | 35..1172 | 5365 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8315422..8316390 | 1002..35 | 4670 | 99.5 | Minus |
| 3R | 32079331 | 3R | 8315197..8315366 | 1163..1000 | 470 | 90.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:47:02 has no hits.
FMO04262.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:06 Download gff for
FMO04262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 89..1249 | 25..1182 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:50:40 Download gff for
FMO04262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 41..1201 | 25..1182 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:54 Download gff for
FMO04262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Coq2-RA | 89..1249 | 25..1182 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:54 Download gff for
FMO04262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8315178..8315363 | 1003..1182 | 91 | <- | Minus |
| 3R | 8315422..8316396 | 25..1002 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:06 Download gff for
FMO04262.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4140900..4141085 | 1003..1182 | 91 | <- | Minus |
| arm_3R | 4141144..4142118 | 25..1002 | 99 | | Minus |
