FMO04263.5prime Sequence
926 bp (926 high quality bases) assembled on 2008-07-30
> FMO04263.5prime
ACTTCGTATAGCATACATTAAACAAAGTTATCAGTCGACATGCCCACCAT
CGAGCACAAGCTAAACATCACCGAGGAGGAGGTTCCGGAGCACATCCGCC
GACTTGCCCAGGAGCAGGGAGAGTGTCCCAGTTCCAAGGATAAGGTCATC
GAACAATTCCGTAACTACATACTAGAACATAATGAATGCCAACCACACAG
AAGTGATGCGAAGTACCTGGAGAAATTCCTAAGAGCCCGCTACTGGAAAA
TCGAGAACAGTTACAAATTGCTCTGCAGTTACTACAGGTTTCGGGAGCAG
AACAAAAGCTTTTATGAGAAGGTTCGTCCTCTGGACCTGAGACATGTTGG
GCAATCGGACATCCTGACAGTGACTCCCTATCGGGATCAACATGGCCATA
GGATACTCATCTACCGATTCGGACTGTGGCGACCCAATCAAGTAACCGTC
GACGATATATTTCGCGCCACCATTGTCCTGCAGGAACTGGGCAGCCTGGA
ACCCATCTCACAGATTGTCGGAGGAGTGGGAATATTCGATCTGAAGGACC
TGGGCTTGGAACACATACTCCACCTGAGTCCCAGCGTGGCTCAGAAGATG
ATTGCTCTACTAGTGACCTCCATGCCCATTAGAACATCCGCCCTTCATAT
TGTAAATCAGAATTGGGTCTTCAACGCGGCATTCAAGATATTTAAACCTT
TCCTCAACGCCGCTATGCGAGAAAAGCTATACATCCATGGCAGTGACATG
ACTTCCCTGCACAAACACATCAACCCAGAACATCTTCCCAAGCGCTATGG
TGGCTTGCACGAGGACTACTCTTATACGCTCTGGTTGGATATGCTGAAGG
AGCAGTGTTCGGGCAATAGTATCCAAAGGATATGGAGCAATTGGGATTCA
TCTTTGACGCAAGCTTTCTAGACCAT
FMO04263.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:26:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10026-RD | 1143 | CG10026-RD | 140..1010 | 39..908 | 4330 | 99.9 | Plus |
| CG10026-RC | 1207 | CG10026-RC | 204..1074 | 39..908 | 4330 | 99.9 | Plus |
| CG10026-RB | 1533 | CG10026-RB | 530..1400 | 39..908 | 4330 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19456823..19457168 | 270..615 | 1730 | 100 | Plus |
| 2L | 23513712 | 2L | 19457227..19457406 | 615..794 | 900 | 100 | Plus |
| 2L | 23513712 | 2L | 19456432..19456568 | 39..175 | 685 | 100 | Plus |
| 2L | 23513712 | 2L | 19457475..19457590 | 794..908 | 530 | 99.1 | Plus |
| 2L | 23513712 | 2L | 19456628..19456724 | 174..270 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:25:59 has no hits.
FMO04263.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:16 Download gff for
FMO04263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RB | 530..1407 | 39..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:57 Download gff for
FMO04263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RC | 204..1081 | 39..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:45 Download gff for
FMO04263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10026-RB | 530..1407 | 39..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:45 Download gff for
FMO04263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19456432..19456568 | 39..175 | 100 | -> | Plus |
| 2L | 19456630..19456724 | 176..270 | 100 | -> | Plus |
| 2L | 19456824..19457168 | 271..615 | 100 | -> | Plus |
| 2L | 19457228..19457406 | 616..794 | 100 | -> | Plus |
| 2L | 19457476..19457597 | 795..916 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:16 Download gff for
FMO04263.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19457228..19457406 | 616..794 | 100 | -> | Plus |
| arm_2L | 19456824..19457168 | 271..615 | 100 | -> | Plus |
| arm_2L | 19457476..19457597 | 795..916 | 96 | | Plus |
| arm_2L | 19456432..19456568 | 39..175 | 100 | -> | Plus |
| arm_2L | 19456630..19456724 | 176..270 | 100 | -> | Plus |
