FMO04264.5prime Sequence
1222 bp (1065 high quality bases) assembled on 2008-07-30
> FMO04264.5prime
CTTCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGGGGAACCAA
TTGGCTATACAGATGAATAGCGATGAAGACGACGATTTTGATTCTTCGGA
CAACGAGCTGGGCTTCAACGTGATCAACTTTACGGTGAACGCCATGGATC
TGCGCTCCGATTATTGCAGCAGCGAGATGCCAGTTATACGAGGCAAGCCC
GATCTAGTTAAATTTCAGAAAACTGATATGTACAAGGAGATCCAGGCGTC
GAGTGGATTAGTGAGCAATCCGAACAATCGCTGGAACCTGGTGCACGCCC
TTCAGCAGCGTGAGAATGGGTTGGCATCGCCGCACAGCGCATCGTTCTCC
AAGAACCAGCAGCGCTACATATCCAATCTTTACATACCAAACAAAAAGGC
CACACGCCTGATGTCGCTGGAATCCAAAATATTTGTGACCAAGTTCAATC
GTTCGGGCAGCAAGTTGCTGACCGCTTGTCAAGATGGCTTTGTGCGCATT
TACGATGGCGCCAAGGGCACTTATCACCTGCTGAATCGCATCCGAGCCCG
CGATGTTGAGTGGAGCATCATCGATGCGGATTTTAGTCCGAATGGCGAGC
ACTTCGCCTACAGCACCTGGTCCCGCTCATTGTTCATCATGCCCGTGAAT
GGGGGGGAAGACGACTGCCAGTGGATCGATGTCAATGGACTGCCAAGCCA
TAGGTTGGCCATCTTCTCGCTGCGCTATTCGCCAACAGGCGACAAAATCA
TCGGGGGCAGCAACAATTCCACGGTCATCGTGACCGACATTCGCACAAGA
AACACACAGATCCTGCGCACCCACCGCATGCCCGGCAAGGATGTTAACTC
GGTGTGCTTCCTACACGATAAGGATCCAAATGTGATAATCGCCGGCTGTG
ACGACGGCCTGCTAAAGGTCTACGACCTGCGCACCACCTTCCGTTCACGG
GACCTGTCCAAGTCTGTGGCATCCTTCATCGGCCACTACGATGGCATCAC
CTACATCGATTCGCGCAACGACGCTACCACGTGCTGTCAACTCCAAGACA
AAGCATCAAATCTGGGACATAAGCAGCGAGCAATATGGCGTATCGCAGTC
GTTCTAGAAAGGCAGTCGACCCACCCCATGACTACGATGACCGCGTCGCG
GGAATCATTCGTAGGCCATAAAGAATCCCAGCTATATAGAACAGTACCGC
GGCTTCCGAGATTTACTCTAAA
FMO04264.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9945-RA | 1925 | CG9945-RA | 207..1338 | 39..1155 | 5210 | 98.1 | Plus |
| CG9945-RB | 1949 | CG9945-RB | 81..1212 | 39..1155 | 5210 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20619476..20619978 | 627..1122 | 2050 | 96.6 | Plus |
| 2R | 25286936 | 2R | 20618953..20619220 | 216..483 | 1340 | 100 | Plus |
| 2R | 25286936 | 2R | 20618709..20618888 | 39..218 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 20619279..20619427 | 482..630 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:55:47 has no hits.
FMO04264.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:32 Download gff for
FMO04264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9945-RB | 77..1180 | 32..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:45:30 Download gff for
FMO04264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9945-RA | 203..1306 | 32..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:34:44 Download gff for
FMO04264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9945-RB | 77..1180 | 32..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:34:44 Download gff for
FMO04264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20618705..20618888 | 32..218 | 97 | -> | Plus |
| 2R | 20618956..20619220 | 219..483 | 100 | -> | Plus |
| 2R | 20619281..20619427 | 484..630 | 100 | -> | Plus |
| 2R | 20619480..20619987 | 631..1130 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:32 Download gff for
FMO04264.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16506210..16506393 | 32..218 | 97 | -> | Plus |
| arm_2R | 16506461..16506725 | 219..483 | 100 | -> | Plus |
| arm_2R | 16506786..16506932 | 484..630 | 100 | -> | Plus |
| arm_2R | 16506985..16507492 | 631..1130 | 97 | | Plus |
