FMO04267.5prime Sequence
688 bp (688 high quality bases) assembled on 2008-07-30
> FMO04267.5prime
CGTATAGCATAATAAAACGAAGTTATCAGTCGACATGAACGGAATGAACT
ATTTTCCGAACTATTACTCCATCGAGGACATATTCGTGACCCAGGAGAAG
GTGGAATGTCGGGTGAACACCAAGCTGCAGCGGATGGGATTCCTGGACTC
CGGCGCGGAATCGGATGACCTGGAGCCCGGCAGGACGGTCAATCTGCCGT
TGTGGTACATCAAGGAGCTGAAGGTAAACAATGCCTACTTCACCGTCGCC
GTGCCAGATATCTATCGCAATGTGCATAAGGCCGTCTGCGAGGCGGAGAC
CACGCACATCGAGCTGGGACGCCTGCACCCGTACTTCTACGAGTTCGGTC
GCTATCTGACGCCCTACGATCGCAACCATGTCATCGGCCGCATCATCTTC
GAAACGCTGCGCCAGAGGGTACGTCATCTCCTGGACATCTCGAAGAGCGA
CGGACAGGCAGCCAAGGCGGAGCATCGACTGGATAACATCGAGGCCAAGC
TGCACGAGGCTGGAGTGCGCACCAACAGTCAGTACATCGAATGGCTGCAG
ATGACGGGCAACAAGATTCGCACCTCGGAGCTGGTCGAGGAGCACCAAAA
GAAGCGGCGACGTGCGGATCGCAGCGATGACGAGGGCGATGCTCTGCCCA
ACAGCAAGCGGGCCACCTTGGCAAGCTTTCTAGACCAT
FMO04267.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Psf3-RC | 2380 | CG2222-RC | 809..1444 | 35..670 | 3180 | 100 | Plus |
| Psf3-RB | 1668 | CG2222-RB | 97..732 | 35..670 | 3180 | 100 | Plus |
| Psf3-RA | 1150 | CG2222-RA | 97..732 | 35..670 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10384488..10384883 | 532..137 | 1980 | 100 | Minus |
| X | 23542271 | X | 10384289..10384430 | 670..529 | 710 | 100 | Minus |
| X | 23542271 | X | 10384950..10385053 | 138..35 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:05 has no hits.
FMO04267.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:50 Download gff for
FMO04267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf3-RA | 97..735 | 35..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:23 Download gff for
FMO04267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf3-RA | 82..720 | 35..674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:55 Download gff for
FMO04267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Psf3-RA | 97..735 | 35..674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:55 Download gff for
FMO04267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10384951..10385053 | 35..137 | 100 | | Minus |
| X | 10384286..10384426 | 533..674 | 98 | <- | Minus |
| X | 10384488..10384882 | 138..532 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:50 Download gff for
FMO04267.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10278319..10278459 | 533..674 | 98 | <- | Minus |
| arm_X | 10278521..10278915 | 138..532 | 100 | <- | Minus |
| arm_X | 10278984..10279086 | 35..137 | 100 | | Minus |
