Clone FMO04268 Report

Search the DGRC for FMO04268

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:42
Well:68
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG30148-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO04268.5prime Sequence

424 bp (424 high quality bases) assembled on 2008-07-30

> FMO04268.5prime
CGTATAGCATAATAAAACGAAGTTATCAGTCGACATGCCTACACTTCCGC
TGTGCCTGCTGCTCCTGGTGTTGGCGATTGCCTTTGGCCACGCCTACGAG
GCACCTGAGGCACAGGTGCGCGTGTTCTATCCCCGGGGATTCGAGGTCTC
CATTCCGGATGCGGAGGGTATTTCACTGTTTGCCTTCCATGGCAAGCTAA
ACGAGGAGTTCGACGGCCTGGAGGCGGGACAATGGTCCAGGGATATTCCG
AAAGCCAAGCGGGGACGTTGGACATTCCGAGATCACAAGACAAAGCTCAA
CCATGGAGATACCCTGTACTTTTGGACCTACGTCATTTACAACGGGCTGG
GCTATAGACAGGATGAAGGTGCTCATGTGGTCACCAGTTACGACAATCCA
CATAAAGCAAGCTTTCTAGACCAT

FMO04268.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG30148-RB 1064 CG30148-RB 56..427 35..406 1845 99.7 Plus
CG30148-RA 618 CG30148-RA 56..427 35..406 1845 99.7 Plus
GNBP3-RA 1531 CG5008-RA 111..341 125..355 315 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20547232..20547603 406..35 1845 99.7 Minus
3L 28110227 3L 8955131..8955361 125..355 315 75.8 Plus
Blast to na_te.dros performed on 2014-11-28 22:02:25 has no hits.

FMO04268.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:49 Download gff for FMO04268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 44..427 23..406 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:48:25 Download gff for FMO04268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 67..450 23..406 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:00 Download gff for FMO04268.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30148-RA 44..427 23..406 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:00 Download gff for FMO04268.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20547232..20547599 39..406 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:49 Download gff for FMO04268.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16434737..16435104 39..406 99 -> Minus