FMO04270.5prime Sequence
1207 bp (1030 high quality bases) assembled on 2008-07-30
> FMO04270.5prime
TCGTATAGCATAATAATACAAAGTTATCAGTCGACATGCGCTTTCTTTAT
GCCTGCTTTGTGATCGTGCTGTGCGCCCTGATCTTCTGCGAATATGTGGC
GGACTTTGTGGTGCTGCAAAAGTGCAAGTGGCCGGAGATAAAGCGAAAGA
AGTATGTGGACGATCCGCTTAGGGCAATGATTCTAGCGGATCCGCATCTG
CTGGGACCGCATCGTGGTCACTGGCTGGACAAGCTCTACCGGGAGTGGCA
CATGACGCGGGCCTTTCAGGCGGCATCACGTCTGTTCCAGCCCGACGTGG
TCTTCGTCTTGGGCGATTTGTTCGACGAGGGCGACATGGTCAGCGACAAG
CAGTTTCAGGAATATGTGTGGCGCTACCTGAAGATGTTCCACCTACCACC
GGGAATTCCGCTCATCAGTGTCGCGGGAAATCATGACGTGGGCTTCCATT
ACAAAATGCATCCCTTCTTTATGTCGCGTTTTGAGAGTTATCTGAACAAC
TCCTCGGTCAATTTGTACACCATTAAACAAATCCATTTTGTGGTGATAAA
TTCGATGGCTATGGAAGGTGATGGTTGCATGTTTTGCACCCAGGCCGAGG
ATCAGTTGAAAAACATTTCGCGGACTTTGTACTGCATGAAGTATCCACTA
GAGGCGGAGTGCGCTCGCACCAGGCGGCACCCGTACAGCCAGCCAATTCT
ATTGCAGCACTTTCCCACCTACCGCATTTCGGATACCATGTGCGAGGAGC
ACGATGCTCCGTACATCGAGGCGTTCCGAGAGCGGTTTCATGTGCTCTCC
AAGGATGCCACGGATATGCTGGGAGAGCTTCTTAAGCCAAGGCTGGCATT
CGCCGGTCATTCACATCACTTCTGTCACAGTGTAAATCGACTGGGCATCG
ATGAGTACACGGTGACCTCATTCAGCTGGCGAAACAAAGTTAATCCCAGC
TTTATGCTGGCCACTATAACCCCCGATGACTATGTGTTTCCAGTGCAAAA
TGCTGCAACAGCAGTTGTCTTCAAAGCTATCTGGATGCTGGCATTCTTTG
CCTAATGTCATCGGTTCAGCTACGAAAGGTGCCATCCAAAGCAGAAGAAC
GTCGTCGCTGTAGATTCAATCGGAAGTATTATTAGACGCAAGCTTCTTGA
CATGTTGGAGCGCGCCAGTAATGGTAATACATAACTCTAGCTCTTATCTC
GGATTAT
FMO04270.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGAP5-RC | 1566 | CG8455-RC | 162..1256 | 36..1126 | 5060 | 98.1 | Plus |
| PGAP5-RB | 1500 | CG8455-RB | 91..1185 | 36..1126 | 5060 | 98.1 | Plus |
| PGAP5-RA | 1565 | CG8455-RA | 91..1185 | 36..1126 | 5060 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8199529..8200034 | 455..960 | 2485 | 99.4 | Plus |
| 2L | 23513712 | 2L | 8199043..8199461 | 36..454 | 2080 | 99.8 | Plus |
| 2L | 23513712 | 2L | 8200101..8200254 | 959..1107 | 285 | 87.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:25:53 has no hits.
FMO04270.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:23:11 Download gff for
FMO04270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGAP5-RA | 83..1189 | 26..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-30 14:42:56 Download gff for
FMO04270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8455-RB | 77..1183 | 26..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:42 Download gff for
FMO04270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGAP5-RA | 83..1189 | 26..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:42 Download gff for
FMO04270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8199033..8199461 | 21..454 | 98 | -> | Plus |
| 2L | 8199529..8200033 | 455..959 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:23:11 Download gff for
FMO04270.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8199033..8199461 | 21..454 | 98 | -> | Plus |
| arm_2L | 8199529..8200033 | 455..959 | 99 | -> | Plus |
